Variant report

Variant	rs12668659
Chromosome Location	chr7:138355174-138355175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28625106	0.99[ASN][1000 genomes]
rs58299439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58646851	0.89[EUR][1000 genomes]
rs61316977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73730412	0.97[ASN][1000 genomes]
rs73730413	0.97[ASN][1000 genomes]
rs73730414	0.94[ASN][1000 genomes]
rs7777388	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138351800-138358200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:138351800-138369200	Weak transcription	Hela-S3	cervix
3	chr7:138352800-138355400	Enhancers	Placenta	Placenta
4	chr7:138354000-138362600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:138355000-138355600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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