Variant report

Variant	rs7777388
Chromosome Location	chr7:138345278-138345279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10267577	1.00[MEX][hapmap]
rs12668659	0.96[ASN][1000 genomes]
rs28625106	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs58299439	0.96[ASN][1000 genomes]
rs61316977	0.96[ASN][1000 genomes]
rs73730412	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73730413	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73730414	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs753223	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138343400-138347200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:138344400-138345400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr7:138344600-138347600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:138344800-138346000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:138344800-138346400	Weak transcription	Placenta	Placenta
6	chr7:138344800-138346600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:138345000-138345800	Weak transcription	Fetal Heart	heart
8	chr7:138345000-138346400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:138345200-138345600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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