Variant report

Variant	rs28625106
Chromosome Location	chr7:138351801-138351802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr7:138349769-138352437	SK-N-SH	brain:	n/a	chr7:138350358-138350365
2	KAP1	chr7:138351215-138352268	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138350238..138352101-chr7:138355837..138358605,2	MCF-7	breast:

Variant related genes	Relation type
SVOPL	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12668659	0.99[ASN][1000 genomes]
rs58299439	0.99[ASN][1000 genomes]
rs61316977	0.99[ASN][1000 genomes]
rs73730412	0.98[ASN][1000 genomes]
rs73730413	0.98[ASN][1000 genomes]
rs73730414	0.95[ASN][1000 genomes]
rs7777388	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138349600-138352800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:138349600-138353000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr7:138349600-138353000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:138349800-138352000	Enhancers	Fetal Intestine Small	intestine
5	chr7:138349800-138352600	Enhancers	Fetal Heart	heart
6	chr7:138349800-138355000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:138350000-138352200	Enhancers	Fetal Intestine Large	intestine
8	chr7:138350000-138353200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:138350200-138352600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:138350200-138353600	Weak transcription	Colonic Mucosa	Colon
11	chr7:138350200-138354800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:138350400-138352000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:138350400-138354000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:138350800-138352600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:138351000-138352200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr7:138351000-138353800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr7:138351000-138354600	Enhancers	H1 Cell Line	embryonic stem cell
18	chr7:138351400-138352600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:138351400-138352800	Weak transcription	Placenta	Placenta
20	chr7:138351600-138352600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:138351600-138352600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr7:138351600-138352800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:138351800-138353200	Weak transcription	HepG2	liver
24	chr7:138351800-138358200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr7:138351800-138369200	Weak transcription	Hela-S3	cervix

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