Variant report

Variant	rs10267577
Chromosome Location	chr7:138184694-138184695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138183893..138185879-chr7:138185893..138187942,2	K562	blood:
2	chr7:138183809..138187798-chr7:138191193..138194471,3	MCF-7	breast:
3	chr7:138179996..138182468-chr7:138183399..138185707,2	K562	blood:
4	chr7:138143749..138145767-chr7:138182950..138184816,2	K562	blood:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10216085	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10216325	0.88[YRI][hapmap]
rs10224459	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10224559	0.88[YRI][hapmap];0.94[AFR][1000 genomes]
rs10226487	0.94[AFR][1000 genomes]
rs10227148	1.00[LWK][hapmap];0.88[YRI][hapmap]
rs10231698	0.87[YRI][hapmap];0.94[AFR][1000 genomes]
rs10232597	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234810	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10236859	0.94[AFR][1000 genomes]
rs10237069	0.94[AFR][1000 genomes]
rs10237544	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237720	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239129	0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs10239202	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239932	0.87[YRI][hapmap];0.94[AFR][1000 genomes]
rs10240387	0.88[YRI][hapmap]
rs10241288	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243069	0.88[YRI][hapmap];0.94[AFR][1000 genomes]
rs10245088	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248255	0.88[YRI][hapmap]
rs10248604	0.84[ASW][hapmap];1.00[LWK][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes]
rs10253989	0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254440	0.88[YRI][hapmap];0.94[AFR][1000 genomes]
rs10254935	0.91[AFR][1000 genomes]
rs10256094	0.88[YRI][hapmap];0.94[AFR][1000 genomes]
rs10256358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256619	0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258403	0.88[YRI][hapmap]
rs10259673	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261236	0.82[AFR][1000 genomes]
rs10268912	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10272478	0.94[AFR][1000 genomes]
rs10277465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281429	0.82[ASW][hapmap];1.00[LWK][hapmap];0.82[AFR][1000 genomes]
rs10281487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1073255	0.94[AFR][1000 genomes]
rs13438570	0.88[YRI][hapmap];0.94[AFR][1000 genomes]
rs28361932	0.82[AFR][1000 genomes]
rs28380017	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28392567	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28407067	0.94[AFR][1000 genomes]
rs28498774	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28502705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28534820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28584756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28598597	0.94[AFR][1000 genomes]
rs28608602	0.94[AFR][1000 genomes]
rs28673291	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28688534	0.94[AFR][1000 genomes]
rs28694658	0.94[AFR][1000 genomes]
rs28706910	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28707292	0.94[AFR][1000 genomes]
rs28714460	0.82[AFR][1000 genomes]
rs28729263	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28762120	0.91[AFR][1000 genomes]
rs28764878	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28816768	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28822161	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2883144	1.00[AMR][1000 genomes]
rs3847123	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3847124	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4329204	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6947993	1.00[AMR][1000 genomes]
rs753223	1.00[MEX][hapmap]
rs7777388	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138147200-138189000	Weak transcription	Thymus	Thymus
2	chr7:138149800-138188600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:138157600-138191400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:138161800-138195800	Weak transcription	Fetal Brain Female	brain
5	chr7:138164000-138191400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:138164000-138199800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:138165000-138192000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:138168000-138196200	Weak transcription	Left Ventricle	heart
9	chr7:138169000-138190200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr7:138175200-138201200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr7:138175400-138185200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:138176400-138186800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr7:138176600-138190200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr7:138176600-138203600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr7:138177000-138189800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr7:138177000-138190200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:138177000-138212600	Weak transcription	Pancreas	Pancrea
18	chr7:138177600-138194600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:138178600-138189200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:138178600-138191400	Weak transcription	Right Atrium	heart
21	chr7:138178600-138212200	Weak transcription	NHLF	lung
22	chr7:138180200-138204200	Weak transcription	Brain Substantia Nigra	brain
23	chr7:138180600-138185600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:138182000-138185000	Weak transcription	Fetal Brain Male	brain
25	chr7:138182200-138196200	Weak transcription	Spleen	Spleen
26	chr7:138183000-138196400	Weak transcription	Fetal Lung	lung
27	chr7:138183000-138203600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:138183400-138184800	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr7:138183400-138184800	Genic enhancers	HepG2	liver
30	chr7:138183400-138185000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:138183400-138185800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr7:138183800-138185000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr7:138184000-138185000	Strong transcription	Primary T cells from cord blood	blood
34	chr7:138184000-138187000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr7:138184200-138184800	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr7:138184200-138185000	ZNF genes & repeats	GM12878-XiMat	blood
37	chr7:138184200-138185200	Enhancers	Ovary	ovary
38	chr7:138184200-138186800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr7:138184400-138184800	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr7:138184400-138185000	Strong transcription	Primary B cells from cord blood	blood
41	chr7:138184400-138185800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:138184400-138186200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr7:138184400-138186800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr7:138184400-138186800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr7:138184400-138187000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr7:138184400-138189000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr7:138184400-138189000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr7:138184400-138189000	Weak transcription	Fetal Thymus	thymus
49	chr7:138184400-138189000	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr7:138184400-138190200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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