Variant report

Variant	rs10226487
Chromosome Location	chr7:138236773-138236774
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:138233620-138239073	HepG2	liver:	n/a	n/a
2	POLR2A	chr7:138236657-138239082	HepG2	liver:	n/a	n/a
3	POLR2A	chr7:138236444-138237053	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138236458..138239025-chr7:138241233..138243076,2	K562	blood:
2	chr7:138231426..138233199-chr7:138233874..138236818,2	K562	blood:

Variant related genes	Relation type
TRIM24	TF binding region

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10224063	1.00[AMR][1000 genomes]
rs10224459	0.89[AFR][1000 genomes]
rs10224559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10227148	1.00[AMR][1000 genomes]
rs10229259	1.00[AMR][1000 genomes]
rs10229430	1.00[AMR][1000 genomes]
rs10231698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232500	1.00[AMR][1000 genomes]
rs10232597	0.88[AFR][1000 genomes]
rs10234810	0.91[AFR][1000 genomes]
rs10236859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237544	0.91[AFR][1000 genomes]
rs10237720	0.94[AFR][1000 genomes]
rs10239129	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239202	0.94[AFR][1000 genomes]
rs10239932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10240387	1.00[AMR][1000 genomes]
rs10241288	0.91[AFR][1000 genomes]
rs10241942	0.94[AFR][1000 genomes]
rs10242105	0.94[AFR][1000 genomes]
rs10243069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245088	0.94[AFR][1000 genomes]
rs10248027	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248255	1.00[AMR][1000 genomes]
rs10248604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249171	1.00[AMR][1000 genomes]
rs10253989	0.80[AFR][1000 genomes]
rs10254196	1.00[AMR][1000 genomes]
rs10254440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254935	0.85[AFR][1000 genomes]
rs10256094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256358	0.94[AFR][1000 genomes]
rs10256619	0.88[AFR][1000 genomes]
rs10256953	1.00[AMR][1000 genomes]
rs10258403	1.00[AMR][1000 genomes]
rs10259673	0.94[AFR][1000 genomes]
rs10261219	1.00[AMR][1000 genomes]
rs10261236	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262919	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10267577	0.94[AFR][1000 genomes]
rs10268912	0.94[AFR][1000 genomes]
rs10272478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274764	1.00[AMR][1000 genomes]
rs10277465	0.94[AFR][1000 genomes]
rs10278741	0.94[AFR][1000 genomes]
rs10281429	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281487	0.94[AFR][1000 genomes]
rs1073255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11506000	1.00[AMR][1000 genomes]
rs11983193	1.00[AMR][1000 genomes]
rs13438570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28361932	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28380017	0.89[AFR][1000 genomes]
rs28392567	0.91[AFR][1000 genomes]
rs28407067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28435503	1.00[AMR][1000 genomes]
rs28480333	1.00[AMR][1000 genomes]
rs28498774	0.91[AFR][1000 genomes]
rs28502705	0.94[AFR][1000 genomes]
rs28514575	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28534820	0.94[AFR][1000 genomes]
rs28546247	1.00[AMR][1000 genomes]
rs28584756	0.94[AFR][1000 genomes]
rs28593099	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28598597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28608602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28653145	1.00[AMR][1000 genomes]
rs28673291	0.91[AFR][1000 genomes]
rs28688534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28691741	1.00[AMR][1000 genomes]
rs28694658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28707292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28714460	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28729263	0.91[AFR][1000 genomes]
rs28762120	0.85[AFR][1000 genomes]
rs28764878	0.91[AFR][1000 genomes]
rs28816768	0.91[AFR][1000 genomes]
rs28822161	0.88[AFR][1000 genomes]
rs28824911	1.00[AMR][1000 genomes]
rs28850964	1.00[AMR][1000 genomes]
rs3847123	0.94[AFR][1000 genomes]
rs3847124	0.94[AFR][1000 genomes]
rs4329204	0.88[AFR][1000 genomes]
rs9986844	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138213000-138236800	Weak transcription	HSMMtube	muscle
2	chr7:138213000-138238600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr7:138213000-138239400	Weak transcription	Right Atrium	heart
4	chr7:138213000-138244200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:138219800-138236800	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:138220200-138240400	Weak transcription	Psoas Muscle	Psoas
7	chr7:138220600-138237200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:138220800-138238400	Strong transcription	H1 Cell Line	embryonic stem cell
9	chr7:138220800-138238400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:138221000-138237000	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:138221200-138241400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:138222000-138236800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr7:138222000-138238400	Weak transcription	Esophagus	oesophagus
14	chr7:138222000-138238400	Weak transcription	Gastric	stomach
15	chr7:138222200-138236800	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:138222200-138238400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr7:138222200-138239400	Strong transcription	Fetal Thymus	thymus
18	chr7:138222400-138239400	Strong transcription	K562	blood
19	chr7:138224200-138236800	Weak transcription	Small Intestine	intestine
20	chr7:138224400-138239400	Weak transcription	Stomach Mucosa	stomach
21	chr7:138225400-138242000	Weak transcription	A549	lung
22	chr7:138227000-138241200	Weak transcription	Hela-S3	cervix
23	chr7:138228000-138237200	Strong transcription	Dnd41	blood
24	chr7:138228400-138239800	Strong transcription	Fetal Lung	lung
25	chr7:138228400-138252600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:138228600-138238000	Strong transcription	Thymus	Thymus
27	chr7:138228600-138239400	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:138228800-138238400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
29	chr7:138229200-138239400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr7:138230000-138238600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr7:138231000-138237400	Strong transcription	Left Ventricle	heart
32	chr7:138231200-138240600	Weak transcription	NHLF	lung
33	chr7:138232000-138237400	Strong transcription	Primary B cells from cord blood	blood
34	chr7:138232200-138241600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr7:138232400-138238400	Strong transcription	Duodenum Mucosa	Duodenum
36	chr7:138232400-138238600	Strong transcription	H9 Cell Line	embryonic stem cell
37	chr7:138232600-138241600	Strong transcription	HepG2	liver
38	chr7:138232800-138239600	Strong transcription	Fetal Intestine Large	intestine
39	chr7:138233200-138237000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:138233400-138238800	Strong transcription	Ovary	ovary
41	chr7:138233600-138237400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr7:138233800-138237600	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr7:138233800-138239400	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr7:138233800-138240400	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr7:138233800-138240400	Strong transcription	Fetal Heart	heart
46	chr7:138234000-138239600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr7:138234400-138240600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr7:138234600-138240600	Weak transcription	NHEK	skin
49	chr7:138234600-138243600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
50	chr7:138234800-138237000	Strong transcription	Rectal Smooth Muscle	rectum

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