Variant report

Variant	rs10262919
Chromosome Location	chr7:138251014-138251015
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138143492..138146637-chr7:138248575..138251275,3	MCF-7	breast:
2	chr7:138145044..138147071-chr7:138248876..138251719,2	K562	blood:
3	chr7:138245855..138248023-chr7:138249211..138253236,3	K562	blood:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10216325	0.86[AFR][1000 genomes]
rs10224063	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10224559	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10226487	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10227148	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229259	1.00[AMR][1000 genomes]
rs10229430	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231698	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232500	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10236859	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237069	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239129	1.00[AMR][1000 genomes]
rs10239932	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10240387	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243069	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248255	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248604	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249171	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254196	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254440	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256094	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256953	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258403	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261219	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261236	1.00[AMR][1000 genomes]
rs10272478	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274764	1.00[AMR][1000 genomes]
rs10281429	1.00[AMR][1000 genomes]
rs1073255	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11506000	1.00[AMR][1000 genomes]
rs11983193	1.00[AMR][1000 genomes]
rs13438570	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28361932	1.00[AMR][1000 genomes]
rs28407067	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28435503	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28480333	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28514575	1.00[AMR][1000 genomes]
rs28546247	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28593099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28598597	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28608602	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28653145	1.00[AMR][1000 genomes]
rs28688534	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28691741	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28694658	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28706910	0.93[AFR][1000 genomes]
rs28707292	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28714460	1.00[AMR][1000 genomes]
rs28824911	1.00[AMR][1000 genomes]
rs28850964	1.00[AMR][1000 genomes]
rs9986844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138228400-138252600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:138235000-138257400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:138235800-138253000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:138235800-138253200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr7:138236000-138254200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:138237000-138251200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
7	chr7:138237000-138251600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:138237000-138252400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr7:138237200-138252600	ZNF genes & repeats	Dnd41	blood
10	chr7:138237400-138251400	ZNF genes & repeats	Primary B cells from cord blood	blood
11	chr7:138238200-138251200	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr7:138238400-138251400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:138238400-138251400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
14	chr7:138238400-138251400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
15	chr7:138238400-138253600	ZNF genes & repeats	Fetal Intestine Small	intestine
16	chr7:138238600-138251200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:138238600-138251600	ZNF genes & repeats	Brain Germinal Matrix	brain
18	chr7:138238600-138251800	ZNF genes & repeats	Fetal Muscle Leg	muscle
19	chr7:138238600-138252200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
20	chr7:138239400-138252600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
21	chr7:138241400-138251200	ZNF genes & repeats	Placenta	Placenta
22	chr7:138242600-138272400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:138242800-138251400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
24	chr7:138246000-138251200	ZNF genes & repeats	Fetal Thymus	thymus
25	chr7:138246200-138251200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:138246200-138251200	ZNF genes & repeats	Lung	lung
27	chr7:138246200-138251200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
28	chr7:138246200-138251400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:138246200-138251600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
30	chr7:138246200-138252000	ZNF genes & repeats	Primary T cells from cord blood	blood
31	chr7:138246600-138251200	ZNF genes & repeats	Spleen	Spleen
32	chr7:138246800-138251400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
33	chr7:138246800-138251400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
34	chr7:138246800-138251400	ZNF genes & repeats	GM12878-XiMat	blood
35	chr7:138246800-138252600	ZNF genes & repeats	Fetal Lung	lung
36	chr7:138246800-138252800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
37	chr7:138247200-138251400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
38	chr7:138247400-138251200	ZNF genes & repeats	Colon Smooth Muscle	Colon
39	chr7:138247600-138251400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
40	chr7:138247600-138251600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
41	chr7:138247600-138252000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
42	chr7:138247800-138251400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
43	chr7:138248000-138252000	ZNF genes & repeats	Fetal Intestine Large	intestine
44	chr7:138248000-138252200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
45	chr7:138248200-138251200	ZNF genes & repeats	Esophagus	oesophagus
46	chr7:138248200-138251400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
47	chr7:138248200-138251400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr7:138248600-138251200	ZNF genes & repeats	Rectal Smooth Muscle	rectum
49	chr7:138249000-138251400	ZNF genes & repeats	HMEC	breast
50	chr7:138249000-138252400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland

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