Variant report

Variant	rs10274764
Chromosome Location	chr7:138141152-138141153
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:138141080-138141230	GM12867	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:138141133-138141183	NH-A	brain:	n/a
2	chr7:138141133-138141183	ECC-1	luminal epithelium:	n/a
3	chr7:138141133-138141183	Hela-S3	cervix:	n/a
4	chr7:138141133-138141183	MCF-7	breast:	n/a
5	chr7:138141133-138141183	HCPEpiC	choroid plexus:	n/a
6	chr7:138141133-138141183	IMR90	lung:	fetal
7	chr7:138141133-138141183	BE2_C	brain:	n/a
8	chr7:138141133-138141183	HNPCEpiC	eye:	n/a
9	chr7:138141133-138141183	H1-hESC	embryonic stem cell:	embryo
10	chr7:138141133-138141183	HEEpiC	esophagus:	n/a
11	chr7:138141133-138141183	SK-N-MC	brain:	n/a
12	chr7:138141133-138141183	HMEC	breast:	n/a
13	chr7:138141133-138141183	HCM	heart:	n/a
14	chr7:138141133-138141183	GM12892	blood:	n/a
15	chr7:138141133-138141183	HCF	heart:	n/a
16	chr7:138141133-138141183	NT2-D1	testis:	n/a
17	chr7:138141133-138141183	A549	lung:	n/a
18	chr7:138141133-138141183	AG10803	skin:	n/a
19	chr7:138141133-138141183	K562	blood:	n/a
20	chr7:138141133-138141183	NHDF-neo	bronchial:	n/a
21	chr7:138141133-138141183	SK-N-SH_RA	brain:	n/a
22	chr7:138141133-138141183	Hepatocyte	liver:	n/a
23	chr7:138141133-138141183	HPAEpiC	pulmonary alveolar:	n/a
24	chr7:138141133-138141183	HepG2	liver:	n/a
25	chr7:138141133-138141183	Jurkat	blood:	n/a
26	chr7:138141133-138141183	AG04450	lung:	fetal
27	chr7:138141133-138141183	HCT-116	colon:	n/a
28	chr7:138141133-138141183	SK-N-SH	brain:	n/a
29	chr7:138141133-138141183	GM12878	blood:	n/a
30	chr7:138141133-138141183	T-47D	breast:	n/a
31	chr7:138141133-138141183	HL-60	blood:	n/a
32	chr7:138141133-138141183	BJ	skin:	n/a
33	chr7:138141133-138141183	AG09309	skin:	n/a
34	chr7:138141133-138141183	NHBE	bronchial:	n/a
35	chr7:138141133-138141183	RPTEC	kidney:	n/a
36	chr7:138141133-138141183	NB4	blood:	n/a
37	chr7:138141133-138141183	AG09319	gingival:	n/a
38	chr7:138141133-138141183	HAEpiC	amniotic membrane:	n/a
39	chr7:138141133-138141183	PANC-1	pancreas:	n/a
40	chr7:138141133-138141183	HEK293	kidney:	embryo
41	chr7:138141133-138141183	GM06990	blood:	n/a
42	chr7:138141133-138141183	SKMC	muscle:	n/a
43	chr7:138141133-138141183	HRE	kidney:	n/a
44	chr7:138141133-138141183	LNCaP	prostate:	n/a
45	chr7:138141133-138141183	MCF10A-Er-Src	breast:	n/a
46	chr7:138141133-138141183	GM12891	blood:	n/a
47	chr7:138141133-138141183	U87	brain:	n/a
48	chr7:138141133-138141183	AG04449	skin:	fetal
49	chr7:138141133-138141183	PrEC	prostate:	n/a
50	chr7:138141133-138141183	ProgFib	skin:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:138138897..138141334-chr7:138143865..138146317,4	K562	blood:
2	chr7:138135634..138137493-chr7:138139366..138141323,2	K562	blood:
3	chr7:138139164..138142124-chr7:138144665..138146895,3	K562	blood:

No data

Variant related genes	Relation type
TRIM24	TF binding region
TRIM24	CpG island
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10224063	1.00[AMR][1000 genomes]
rs10224559	1.00[AMR][1000 genomes]
rs10226487	1.00[AMR][1000 genomes]
rs10227148	1.00[AMR][1000 genomes]
rs10229259	1.00[AMR][1000 genomes]
rs10229430	1.00[AMR][1000 genomes]
rs10231698	1.00[AMR][1000 genomes]
rs10232500	1.00[AMR][1000 genomes]
rs10236859	1.00[AMR][1000 genomes]
rs10237069	1.00[AMR][1000 genomes]
rs10239129	1.00[AMR][1000 genomes]
rs10239932	1.00[AMR][1000 genomes]
rs10240387	1.00[AMR][1000 genomes]
rs10243069	1.00[AMR][1000 genomes]
rs10248027	1.00[AMR][1000 genomes]
rs10248255	1.00[AMR][1000 genomes]
rs10248604	1.00[AMR][1000 genomes]
rs10249171	1.00[AMR][1000 genomes]
rs10254196	1.00[AMR][1000 genomes]
rs10254440	1.00[AMR][1000 genomes]
rs10256094	1.00[AMR][1000 genomes]
rs10256953	1.00[AMR][1000 genomes]
rs10258403	1.00[AMR][1000 genomes]
rs10261219	1.00[AMR][1000 genomes]
rs10261236	1.00[AMR][1000 genomes]
rs10262919	1.00[AMR][1000 genomes]
rs10272478	1.00[AMR][1000 genomes]
rs10281429	1.00[AMR][1000 genomes]
rs1073255	1.00[AMR][1000 genomes]
rs11506000	1.00[AMR][1000 genomes]
rs11983193	1.00[AMR][1000 genomes]
rs13438570	1.00[AMR][1000 genomes]
rs28361932	1.00[AMR][1000 genomes]
rs28407067	1.00[AMR][1000 genomes]
rs28435503	1.00[AMR][1000 genomes]
rs28480333	1.00[AMR][1000 genomes]
rs28514575	1.00[AMR][1000 genomes]
rs28546247	1.00[AMR][1000 genomes]
rs28593099	1.00[AMR][1000 genomes]
rs28598597	1.00[AMR][1000 genomes]
rs28608602	1.00[AMR][1000 genomes]
rs28653145	1.00[AMR][1000 genomes]
rs28688534	1.00[AMR][1000 genomes]
rs28691741	1.00[AMR][1000 genomes]
rs28694658	1.00[AMR][1000 genomes]
rs28707292	1.00[AMR][1000 genomes]
rs28714460	1.00[AMR][1000 genomes]
rs28824911	1.00[AMR][1000 genomes]
rs28850964	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9986844	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138138400-138142400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:138140000-138141200	Enhancers	Liver	Liver
3	chr7:138140000-138141400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:138140000-138141400	Enhancers	HepG2	liver
5	chr7:138140200-138141200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr7:138140200-138141400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:138140400-138141200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:138140600-138142200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:138140600-138142400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:138140600-138142600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:138140600-138142600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:138140600-138142600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:138140600-138142600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:138140600-138144200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:138140600-138144200	Weak transcription	Fetal Intestine Large	intestine
16	chr7:138140800-138143200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:138141000-138141200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:138141000-138142600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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