Variant report

Variant	rs10256094
Chromosome Location	chr7:138257872-138257873
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138246609..138249506-chr7:138257780..138259380,2	K562	blood:
2	chr6:27100807..27103130-chr7:138256613..138259241,2	MCF-7	breast:
3	chr7:138257087..138259853-chr7:138260870..138262972,2	K562	blood:

Variant related genes	Relation type
ENSG00000196787	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10216325	1.00[YRI][hapmap]
rs10224063	1.00[AMR][1000 genomes]
rs10224459	0.89[AFR][1000 genomes]
rs10224559	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10226487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10227148	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10229259	1.00[AMR][1000 genomes]
rs10229430	1.00[AMR][1000 genomes]
rs10231698	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232500	1.00[AMR][1000 genomes]
rs10232597	0.88[AFR][1000 genomes]
rs10234810	0.91[AFR][1000 genomes]
rs10236859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237544	0.87[YRI][hapmap];0.91[AFR][1000 genomes]
rs10237720	0.89[YRI][hapmap];0.94[AFR][1000 genomes]
rs10239129	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239202	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs10239932	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10240387	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10241288	0.88[YRI][hapmap];0.91[AFR][1000 genomes]
rs10241942	0.94[AFR][1000 genomes]
rs10242105	0.94[AFR][1000 genomes]
rs10243069	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245088	0.89[YRI][hapmap];0.94[AFR][1000 genomes]
rs10248027	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248255	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10248604	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249171	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs10253989	0.80[YRI][hapmap];0.80[AFR][1000 genomes]
rs10254196	1.00[AMR][1000 genomes]
rs10254440	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254935	0.85[AFR][1000 genomes]
rs10256358	0.94[AFR][1000 genomes]
rs10256619	0.88[YRI][hapmap];0.88[AFR][1000 genomes]
rs10256953	1.00[AMR][1000 genomes]
rs10258403	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10259673	0.94[AFR][1000 genomes]
rs10261219	1.00[AMR][1000 genomes]
rs10261236	0.88[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262919	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10267577	0.88[YRI][hapmap];0.94[AFR][1000 genomes]
rs10268912	0.89[YRI][hapmap];0.94[AFR][1000 genomes]
rs10272478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274764	1.00[AMR][1000 genomes]
rs10277465	0.94[AFR][1000 genomes]
rs10278741	0.94[AFR][1000 genomes]
rs10281429	0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281487	0.94[AFR][1000 genomes]
rs1073255	0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11506000	1.00[AMR][1000 genomes]
rs11983193	1.00[AMR][1000 genomes]
rs13438570	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28361932	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28380017	0.89[AFR][1000 genomes]
rs28392567	0.91[AFR][1000 genomes]
rs28407067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28435503	1.00[AMR][1000 genomes]
rs28480333	1.00[AMR][1000 genomes]
rs28498774	0.91[AFR][1000 genomes]
rs28502705	0.94[AFR][1000 genomes]
rs28514575	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28534820	0.94[AFR][1000 genomes]
rs28546247	1.00[AMR][1000 genomes]
rs28584756	0.94[AFR][1000 genomes]
rs28593099	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28598597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28608602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28653145	1.00[AMR][1000 genomes]
rs28673291	0.91[AFR][1000 genomes]
rs28688534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28691741	1.00[AMR][1000 genomes]
rs28694658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28707292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28714460	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28729263	0.91[AFR][1000 genomes]
rs28762120	0.85[AFR][1000 genomes]
rs28764878	0.91[AFR][1000 genomes]
rs28816768	0.91[AFR][1000 genomes]
rs28822161	0.88[AFR][1000 genomes]
rs28824911	1.00[AMR][1000 genomes]
rs28850964	1.00[AMR][1000 genomes]
rs3847123	0.89[YRI][hapmap];0.94[AFR][1000 genomes]
rs3847124	0.89[YRI][hapmap];0.94[AFR][1000 genomes]
rs4329204	0.88[AFR][1000 genomes]
rs9986844	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138242600-138272400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:138250200-138273800	Weak transcription	Gastric	stomach
3	chr7:138250400-138267600	Weak transcription	NHLF	lung
4	chr7:138250400-138272000	Weak transcription	Small Intestine	intestine
5	chr7:138250400-138273000	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:138250600-138263800	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:138250600-138264000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:138250600-138270600	Weak transcription	Fetal Brain Male	brain
9	chr7:138250600-138271800	Weak transcription	Right Ventricle	heart
10	chr7:138250600-138273000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:138250600-138273400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:138250800-138258000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr7:138250800-138263800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:138250800-138264000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:138250800-138272400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:138250800-138272600	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr7:138250800-138273200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:138251000-138264000	Weak transcription	Psoas Muscle	Psoas
19	chr7:138251000-138267800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr7:138251000-138272800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:138251000-138272800	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr7:138251200-138272800	Strong transcription	Fetal Thymus	thymus
23	chr7:138251200-138273000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:138251400-138259000	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr7:138251400-138259200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:138251400-138259600	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr7:138251400-138259600	Strong transcription	Duodenum Mucosa	Duodenum
28	chr7:138251400-138260600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr7:138251400-138262000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr7:138251400-138263600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr7:138251400-138266200	Strong transcription	Primary B cells from cord blood	blood
32	chr7:138251400-138270800	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr7:138251400-138273000	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:138251400-138273000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr7:138251600-138258800	Strong transcription	Placenta	Placenta
36	chr7:138251600-138265400	Strong transcription	H9 Cell Line	embryonic stem cell
37	chr7:138251600-138273200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:138251800-138258600	Weak transcription	Fetal Heart	heart
39	chr7:138251800-138259000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:138251800-138264000	Weak transcription	NHDF-Ad	bronchial
41	chr7:138252000-138259000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr7:138252000-138264000	Weak transcription	Colonic Mucosa	Colon
43	chr7:138252000-138266600	Strong transcription	Primary T cells from cord blood	blood
44	chr7:138252000-138270800	Strong transcription	HepG2	liver
45	chr7:138252000-138272800	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr7:138252200-138259000	Strong transcription	Adipose Nuclei	Adipose
47	chr7:138252200-138261200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr7:138252200-138263600	Weak transcription	Colon Smooth Muscle	Colon
49	chr7:138252200-138270400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr7:138252200-138271800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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