Variant report

Variant	rs10229259
Chromosome Location	chr7:138115506-138115507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138114924..138116896-chr7:138118468..138121026,2	K562	blood:
2	chr7:138113656..138118037-chr7:138143225..138147553,4	K562	blood:
3	chr7:138114924..138116891-chr7:138118202..138121026,2	K562	blood:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10224063	1.00[AMR][1000 genomes]
rs10224559	1.00[AMR][1000 genomes]
rs10226487	1.00[AMR][1000 genomes]
rs10227148	1.00[AMR][1000 genomes]
rs10229430	1.00[AMR][1000 genomes]
rs10231698	1.00[AMR][1000 genomes]
rs10232500	1.00[AMR][1000 genomes]
rs10236859	1.00[AMR][1000 genomes]
rs10237069	1.00[AMR][1000 genomes]
rs10239129	1.00[AMR][1000 genomes]
rs10239932	1.00[AMR][1000 genomes]
rs10240387	1.00[AMR][1000 genomes]
rs10243069	1.00[AMR][1000 genomes]
rs10248027	1.00[AMR][1000 genomes]
rs10248255	1.00[AMR][1000 genomes]
rs10248604	1.00[AMR][1000 genomes]
rs10249171	1.00[AMR][1000 genomes]
rs10254196	1.00[AMR][1000 genomes]
rs10254440	1.00[AMR][1000 genomes]
rs10256094	1.00[AMR][1000 genomes]
rs10256953	1.00[AMR][1000 genomes]
rs10258403	1.00[AMR][1000 genomes]
rs10261219	1.00[AMR][1000 genomes]
rs10261236	1.00[AMR][1000 genomes]
rs10262919	1.00[AMR][1000 genomes]
rs10272478	1.00[AMR][1000 genomes]
rs10274764	1.00[AMR][1000 genomes]
rs10281429	1.00[AMR][1000 genomes]
rs1073255	1.00[AMR][1000 genomes]
rs11506000	1.00[AMR][1000 genomes]
rs11983193	1.00[AMR][1000 genomes]
rs13438570	1.00[AMR][1000 genomes]
rs28361932	1.00[AMR][1000 genomes]
rs28407067	1.00[AMR][1000 genomes]
rs28435503	1.00[AMR][1000 genomes]
rs28480333	1.00[AMR][1000 genomes]
rs28514575	1.00[AMR][1000 genomes]
rs28546247	1.00[AMR][1000 genomes]
rs28593099	1.00[AMR][1000 genomes]
rs28598597	1.00[AMR][1000 genomes]
rs28608602	1.00[AMR][1000 genomes]
rs28653145	1.00[AMR][1000 genomes]
rs28688534	1.00[AMR][1000 genomes]
rs28691741	1.00[AMR][1000 genomes]
rs28694658	1.00[AMR][1000 genomes]
rs28707292	1.00[AMR][1000 genomes]
rs28714460	1.00[AMR][1000 genomes]
rs28824911	1.00[AMR][1000 genomes]
rs28850964	1.00[AMR][1000 genomes]
rs9986844	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138112600-138117000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr7:138113800-138117200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:138114000-138116400	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr7:138114200-138117200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:138114600-138116600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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