Variant report

Variant	rs10237544
Chromosome Location	chr7:138221567-138221568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10216085	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10216325	0.87[YRI][hapmap]
rs10224459	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10224559	0.87[YRI][hapmap];0.91[AFR][1000 genomes]
rs10226487	0.91[AFR][1000 genomes]
rs10227148	0.85[YRI][hapmap]
rs10231698	0.87[YRI][hapmap];0.91[AFR][1000 genomes]
rs10232597	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234810	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10236859	0.91[AFR][1000 genomes]
rs10237069	0.91[AFR][1000 genomes]
rs10237720	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239129	0.85[YRI][hapmap];0.86[AFR][1000 genomes]
rs10239202	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239932	0.85[YRI][hapmap];0.91[AFR][1000 genomes]
rs10240387	0.87[YRI][hapmap]
rs10241288	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241942	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242105	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243069	0.87[YRI][hapmap];0.91[AFR][1000 genomes]
rs10245088	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248255	0.87[YRI][hapmap]
rs10248604	0.85[YRI][hapmap];0.91[AFR][1000 genomes]
rs10253989	0.88[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254440	0.87[YRI][hapmap];0.91[AFR][1000 genomes]
rs10254935	0.94[AFR][1000 genomes]
rs10256094	0.87[YRI][hapmap];0.91[AFR][1000 genomes]
rs10256358	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256619	0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258403	0.87[YRI][hapmap]
rs10259673	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10267577	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268912	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10272478	0.91[AFR][1000 genomes]
rs10277465	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278741	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281487	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1073255	0.91[AFR][1000 genomes]
rs13438570	0.87[YRI][hapmap];0.91[AFR][1000 genomes]
rs28380017	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28392567	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28407067	0.91[AFR][1000 genomes]
rs28498774	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28502705	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28534820	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28584756	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28598597	0.91[AFR][1000 genomes]
rs28608602	0.91[AFR][1000 genomes]
rs28673291	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28688534	0.91[AFR][1000 genomes]
rs28694658	0.91[AFR][1000 genomes]
rs28706910	1.00[AMR][1000 genomes]
rs28707292	0.91[AFR][1000 genomes]
rs28729263	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28762120	0.88[AFR][1000 genomes]
rs28764878	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28816768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28822161	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2883144	1.00[AMR][1000 genomes]
rs3847123	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3847124	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4329204	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6947993	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138212800-138222600	Weak transcription	Fetal Heart	heart
2	chr7:138213000-138221800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:138213000-138222800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:138213000-138222800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:138213000-138223000	Weak transcription	Hela-S3	cervix
6	chr7:138213000-138223200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:138213000-138223600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:138213000-138223800	Weak transcription	Stomach Mucosa	stomach
9	chr7:138213000-138224800	Weak transcription	HSMM	muscle
10	chr7:138213000-138225000	Weak transcription	Fetal Brain Male	brain
11	chr7:138213000-138230800	Weak transcription	NHLF	lung
12	chr7:138213000-138234000	Weak transcription	Brain Hippocampus Middle	brain
13	chr7:138213000-138234800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:138213000-138235200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:138213000-138235600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:138213000-138235800	Weak transcription	Brain Angular Gyrus	brain
17	chr7:138213000-138235800	Weak transcription	Pancreas	Pancrea
18	chr7:138213000-138235800	Weak transcription	NHDF-Ad	bronchial
19	chr7:138213000-138235800	Weak transcription	Osteobl	bone
20	chr7:138213000-138236800	Weak transcription	HSMMtube	muscle
21	chr7:138213000-138238600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:138213000-138239400	Weak transcription	Right Atrium	heart
23	chr7:138213000-138244200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:138213200-138222400	Weak transcription	Brain Substantia Nigra	brain
25	chr7:138213200-138235800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:138213200-138235800	Weak transcription	Colon Smooth Muscle	Colon
27	chr7:138213200-138236000	Weak transcription	Right Ventricle	heart
28	chr7:138213400-138223400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:138213400-138225200	Weak transcription	Brain Anterior Caudate	brain
30	chr7:138213600-138223400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr7:138214400-138222400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr7:138214400-138223200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:138214400-138224000	Weak transcription	NH-A	brain
34	chr7:138214600-138222400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr7:138214600-138222400	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr7:138214600-138222800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr7:138214600-138222800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr7:138214600-138223400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr7:138214600-138224000	Weak transcription	A549	lung
40	chr7:138214600-138235800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr7:138214600-138235800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr7:138214600-138235800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr7:138215000-138223600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr7:138215600-138222800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr7:138215800-138221600	Weak transcription	Primary T cells from cord blood	blood
46	chr7:138215800-138222000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr7:138215800-138222400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr7:138215800-138222400	Weak transcription	K562	blood
49	chr7:138215800-138222600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr7:138215800-138222600	Weak transcription	HepG2	liver

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