Variant report

Variant	rs6947993
Chromosome Location	chr7:138109818-138109819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10216085	1.00[AMR][1000 genomes]
rs10224459	1.00[AMR][1000 genomes]
rs10232597	1.00[AMR][1000 genomes]
rs10234810	1.00[AMR][1000 genomes]
rs10237544	1.00[AMR][1000 genomes]
rs10237720	1.00[AMR][1000 genomes]
rs10239202	1.00[AMR][1000 genomes]
rs10241288	1.00[AMR][1000 genomes]
rs10241942	1.00[AMR][1000 genomes]
rs10242105	1.00[AMR][1000 genomes]
rs10245088	1.00[AMR][1000 genomes]
rs10253989	1.00[AMR][1000 genomes]
rs10256358	1.00[AMR][1000 genomes]
rs10256619	1.00[AMR][1000 genomes]
rs10259673	1.00[AMR][1000 genomes]
rs10267577	1.00[AMR][1000 genomes]
rs10268912	1.00[AMR][1000 genomes]
rs10277465	1.00[AMR][1000 genomes]
rs10278741	1.00[AMR][1000 genomes]
rs10281487	1.00[AMR][1000 genomes]
rs28380017	1.00[AMR][1000 genomes]
rs28392567	1.00[AMR][1000 genomes]
rs28498774	1.00[AMR][1000 genomes]
rs28502705	1.00[AMR][1000 genomes]
rs28534820	1.00[AMR][1000 genomes]
rs28584756	1.00[AMR][1000 genomes]
rs28673291	1.00[AMR][1000 genomes]
rs28706910	1.00[AMR][1000 genomes]
rs28729263	1.00[AMR][1000 genomes]
rs28764878	1.00[AMR][1000 genomes]
rs28816768	1.00[AMR][1000 genomes]
rs28822161	1.00[AMR][1000 genomes]
rs2883144	1.00[AMR][1000 genomes]
rs3847123	1.00[AMR][1000 genomes]
rs3847124	1.00[AMR][1000 genomes]
rs4329204	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138109400-138110000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:138109600-138110200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr7:138109600-138110200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:138109800-138110200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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