Variant report

Variant	rs10216085
Chromosome Location	chr7:138153051-138153052
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138144412..138146754-chr7:138152739..138156898,3	MCF-7	breast:
2	chr7:138147796..138149894-chr7:138152211..138154703,2	MCF-7	breast:
3	chr7:138151964..138154858-chr7:138178266..138180114,2	K562	blood:
4	chr7:138036289..138038614-chr7:138151347..138153199,2	K562	blood:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10224459	1.00[AMR][1000 genomes]
rs10232597	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234810	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237544	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237720	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239129	0.82[AFR][1000 genomes]
rs10239202	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241288	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241942	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242105	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245088	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253989	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256358	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256619	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259673	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261236	0.82[AFR][1000 genomes]
rs10267577	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268912	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277465	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278741	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281429	0.82[AFR][1000 genomes]
rs10281487	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28361932	0.82[AFR][1000 genomes]
rs28380017	1.00[AMR][1000 genomes]
rs28392567	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28498774	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28502705	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28534820	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28584756	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28673291	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28706910	1.00[AMR][1000 genomes]
rs28714460	0.82[AFR][1000 genomes]
rs28729263	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28764878	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28816768	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28822161	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2883144	1.00[AMR][1000 genomes]
rs3847123	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3847124	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4329204	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6947993	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138146800-138163200	Weak transcription	Aorta	Aorta
2	chr7:138147000-138153400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:138147000-138153400	Weak transcription	Brain Substantia Nigra	brain
4	chr7:138147000-138153400	Weak transcription	Esophagus	oesophagus
5	chr7:138147000-138153400	Weak transcription	Fetal Stomach	stomach
6	chr7:138147000-138153400	Weak transcription	Left Ventricle	heart
7	chr7:138147000-138153400	Weak transcription	Right Ventricle	heart
8	chr7:138147000-138153400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr7:138147000-138153400	Weak transcription	Spleen	Spleen
10	chr7:138147000-138157200	Weak transcription	Gastric	stomach
11	chr7:138147000-138160200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:138147000-138161400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:138147000-138162200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr7:138147000-138162400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:138147000-138165000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr7:138147200-138153600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr7:138147200-138163200	Weak transcription	Fetal Thymus	thymus
18	chr7:138147200-138168400	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:138147200-138183800	Weak transcription	Primary B cells from cord blood	blood
20	chr7:138147200-138189000	Weak transcription	Thymus	Thymus
21	chr7:138147400-138160000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:138147600-138153200	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:138147600-138153400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:138147600-138153400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr7:138147600-138153400	Weak transcription	Psoas Muscle	Psoas
26	chr7:138147600-138154600	Weak transcription	Stomach Mucosa	stomach
27	chr7:138147600-138156000	Weak transcription	HMEC	breast
28	chr7:138147600-138157400	Weak transcription	Right Atrium	heart
29	chr7:138147800-138154600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:138148200-138157200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr7:138148200-138160200	Weak transcription	Lung	lung
32	chr7:138148200-138163000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr7:138148200-138164200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr7:138148400-138153400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr7:138148400-138155200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr7:138148400-138155400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr7:138148400-138159400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr7:138148400-138160200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr7:138149200-138155200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr7:138149800-138188600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:138150000-138153400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr7:138150000-138159400	Weak transcription	Dnd41	blood
43	chr7:138150200-138153200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr7:138150200-138153600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr7:138150200-138155000	Weak transcription	Primary T cells from cord blood	blood
46	chr7:138150400-138153400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr7:138150400-138153400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr7:138150400-138153400	Weak transcription	Fetal Lung	lung
49	chr7:138150800-138153400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr7:138151200-138153400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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