Variant report

Variant	rs28706910
Chromosome Location	chr7:138202097-138202098
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138144273..138147062-chr7:138199670..138202711,4	K562	blood:
2	chr7:137845735..137846635-chr7:138201766..138202517,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10216085	1.00[AMR][1000 genomes]
rs10224063	0.86[AFR][1000 genomes]
rs10224459	1.00[AMR][1000 genomes]
rs10227148	0.89[AFR][1000 genomes]
rs10232500	0.86[AFR][1000 genomes]
rs10232597	1.00[AMR][1000 genomes]
rs10234810	1.00[AMR][1000 genomes]
rs10237544	1.00[AMR][1000 genomes]
rs10237720	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239202	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10240387	0.89[AFR][1000 genomes]
rs10241288	1.00[AMR][1000 genomes]
rs10241942	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242105	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245088	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248027	0.93[AFR][1000 genomes]
rs10248255	0.86[AFR][1000 genomes]
rs10249171	0.82[AFR][1000 genomes]
rs10253989	1.00[AMR][1000 genomes]
rs10256358	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256619	1.00[AMR][1000 genomes]
rs10256953	0.82[AFR][1000 genomes]
rs10258403	0.86[AFR][1000 genomes]
rs10259673	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261219	0.89[AFR][1000 genomes]
rs10262919	0.93[AFR][1000 genomes]
rs10267577	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268912	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277465	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278741	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281487	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28380017	1.00[AMR][1000 genomes]
rs28392567	1.00[AMR][1000 genomes]
rs28435503	0.83[AFR][1000 genomes]
rs28480333	0.89[AFR][1000 genomes]
rs28498774	1.00[AMR][1000 genomes]
rs28502705	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28534820	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28546247	0.89[AFR][1000 genomes]
rs28584756	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28593099	0.93[AFR][1000 genomes]
rs28673291	1.00[AMR][1000 genomes]
rs28691741	0.89[AFR][1000 genomes]
rs28729263	1.00[AMR][1000 genomes]
rs28764878	1.00[AMR][1000 genomes]
rs28816768	1.00[AMR][1000 genomes]
rs28822161	1.00[AMR][1000 genomes]
rs2883144	1.00[AMR][1000 genomes]
rs3847123	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3847124	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4329204	1.00[AMR][1000 genomes]
rs6947993	1.00[AMR][1000 genomes]
rs9986844	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138176600-138203600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr7:138177000-138212600	Weak transcription	Pancreas	Pancrea
3	chr7:138178600-138212200	Weak transcription	NHLF	lung
4	chr7:138180200-138204200	Weak transcription	Brain Substantia Nigra	brain
5	chr7:138183000-138203600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:138184800-138204000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:138186600-138210400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:138187400-138203800	Weak transcription	Psoas Muscle	Psoas
9	chr7:138187600-138202600	Weak transcription	Hela-S3	cervix
10	chr7:138187600-138203600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:138188000-138204200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr7:138188200-138203800	Weak transcription	Colonic Mucosa	Colon
13	chr7:138188400-138209800	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr7:138188600-138203600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr7:138188800-138210400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:138188800-138210600	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:138189000-138203200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr7:138190200-138212200	Weak transcription	HMEC	breast
19	chr7:138191600-138203800	Weak transcription	HSMM	muscle
20	chr7:138192000-138212200	Weak transcription	Stomach Mucosa	stomach
21	chr7:138192200-138207400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr7:138193600-138203200	Weak transcription	HUVEC	blood vessel
23	chr7:138193600-138204000	Weak transcription	Brain Angular Gyrus	brain
24	chr7:138194000-138212000	Weak transcription	NHDF-Ad	bronchial
25	chr7:138194800-138203800	Weak transcription	Right Ventricle	heart
26	chr7:138195000-138203400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:138195000-138203800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr7:138195200-138205600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr7:138195200-138212200	Weak transcription	Colon Smooth Muscle	Colon
30	chr7:138196000-138203400	Weak transcription	HSMMtube	muscle
31	chr7:138196400-138202800	Strong transcription	Primary T cells from cord blood	blood
32	chr7:138196800-138209400	Strong transcription	Dnd41	blood
33	chr7:138197000-138204000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr7:138197000-138216000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:138197400-138203400	Weak transcription	Lung	lung
36	chr7:138197400-138203800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr7:138197400-138204000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr7:138197400-138204000	Weak transcription	Aorta	Aorta
39	chr7:138197400-138208800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:138197400-138210600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr7:138197400-138212600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr7:138197600-138203400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr7:138197600-138203400	Weak transcription	Gastric	stomach
44	chr7:138197600-138203400	Weak transcription	Left Ventricle	heart
45	chr7:138197600-138203400	Weak transcription	Ovary	ovary
46	chr7:138197600-138204000	Weak transcription	Spleen	Spleen
47	chr7:138197600-138207400	Strong transcription	Fetal Thymus	thymus
48	chr7:138197600-138208400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr7:138197600-138208600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr7:138197600-138209400	Strong transcription	HUES64 Cell Line	embryonic stem cell

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