Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10485887	1.00[YRI][hapmap]
rs11765817	1.00[YRI][hapmap]
rs13243127	1.00[YRI][hapmap]
rs16886179	0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17150922	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3801362	1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56309632	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56332610	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62467108	0.85[EUR][1000 genomes]
rs62467119	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62467120	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62467122	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62468562	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62468563	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62468568	0.85[EUR][1000 genomes]
rs62468570	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62468573	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62468578	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67219137	0.85[EUR][1000 genomes]
rs73141150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2761339	chr7:78162153-78176756	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78157000-78172000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:78158800-78169200	Weak transcription	Aorta	Aorta
3	chr7:78158800-78172000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:78158800-78191000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:78160400-78164800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:78160400-78170200	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:78160400-78170600	Weak transcription	Brain Anterior Caudate	brain
8	chr7:78161800-78163800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:78162200-78164400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:78162200-78164800	Weak transcription	Fetal Brain Female	brain
11	chr7:78163600-78164000	Enhancers	Fetal Heart	heart

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