Variant report

Variant	rs16886179
Chromosome Location	chr7:78154030-78154031
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12670044	0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17150922	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3801362	0.82[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56309632	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56332610	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62467108	0.82[EUR][1000 genomes]
rs62467119	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62467120	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62467122	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62468562	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62468563	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62468568	0.83[EUR][1000 genomes]
rs62468570	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62468573	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62468578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67219137	0.83[EUR][1000 genomes]
rs73141150	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78128800-78158400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:78138400-78161800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:78144200-78160000	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:78144400-78156400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:78144400-78158200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:78144400-78158600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:78146600-78156400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:78151600-78158400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:78153200-78154400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:78153400-78159600	Weak transcription	Brain Angular Gyrus	brain
11	chr7:78153600-78157200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:78153800-78156600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:78153800-78156800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:78153800-78157600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:78153800-78158000	Weak transcription	Osteobl	bone
16	chr7:78154000-78156600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:78154000-78157600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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