Variant report

Variant	rs62467108
Chromosome Location	chr7:78125387-78125388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12670044	0.85[EUR][1000 genomes]
rs16886179	0.82[EUR][1000 genomes]
rs17150922	0.90[EUR][1000 genomes]
rs3801362	0.92[EUR][1000 genomes]
rs56309632	0.92[EUR][1000 genomes]
rs56332610	0.90[EUR][1000 genomes]
rs62467119	0.92[EUR][1000 genomes]
rs62467120	0.92[EUR][1000 genomes]
rs62467122	0.92[EUR][1000 genomes]
rs62468562	0.88[EUR][1000 genomes]
rs62468563	0.90[EUR][1000 genomes]
rs62468568	0.85[EUR][1000 genomes]
rs62468570	0.92[EUR][1000 genomes]
rs62468573	0.88[EUR][1000 genomes]
rs62468578	0.88[EUR][1000 genomes]
rs67219137	0.85[EUR][1000 genomes]
rs73141150	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78114800-78127800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:78116600-78125600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:78119400-78125800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:78119400-78128000	Enhancers	Brain Substantia Nigra	brain
5	chr7:78119400-78130200	Weak transcription	Aorta	Aorta
6	chr7:78119600-78145600	Weak transcription	Ovary	ovary
7	chr7:78119800-78128400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:78119800-78132400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:78121800-78125800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:78122000-78127400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:78122000-78130400	Weak transcription	Brain Germinal Matrix	brain
12	chr7:78122200-78125600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:78122400-78125800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:78122600-78125600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:78122600-78143800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:78122800-78125400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:78123000-78125400	Enhancers	Brain Anterior Caudate	brain
18	chr7:78123000-78125800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:78123000-78126600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:78123200-78125400	Weak transcription	Brain Angular Gyrus	brain
21	chr7:78123400-78125400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:78123600-78125400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:78124800-78126000	Active TSS	Brain Hippocampus Middle	brain
24	chr7:78125000-78125600	Weak transcription	Brain Inferior Temporal Lobe	brain

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