Variant report

Variant	rs12671672
Chromosome Location	chr7:117614220-117614221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12533442	0.90[ASN][1000 genomes]
rs16870153	1.00[CEU][hapmap];0.90[CHD][hapmap]
rs17140580	0.96[ASN][1000 genomes]
rs2074136	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs55813960	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6971975	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs73718507	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs12671672	FOSB	trans	brain	seeQTL
rs12671672	PTGS2	trans	brain	seeQTL
rs12671672	ARC	trans	brain	seeQTL
rs12671672	EGR2	trans	brain	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117612800-117616400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:117613000-117615000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:117613000-117617200	Enhancers	Fetal Lung	lung
4	chr7:117613800-117615800	Enhancers	Adipose Nuclei	Adipose
5	chr7:117614200-117616000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr7:117614200-117616400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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