Variant report

Variant	rs6971975
Chromosome Location	chr7:117642362-117642363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10487383	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12671672	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs16870153	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17140580	0.89[ASN][1000 genomes]
rs2074136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117633400-117645400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:117638800-117644600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:117639400-117643800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:117641200-117647000	Weak transcription	Fetal Kidney	kidney
5	chr7:117641400-117643000	Weak transcription	Fetal Brain Male	brain
6	chr7:117641400-117644000	Weak transcription	Fetal Brain Female	brain
7	chr7:117641600-117643000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:117641600-117643000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:117641600-117653800	Weak transcription	Pancreas	Pancrea
10	chr7:117642000-117643000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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