Variant report

Variant	rs2074136
Chromosome Location	chr7:117643268-117643269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10487383	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12671672	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs16870153	1.00[CEU][hapmap];0.84[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17140580	0.89[ASN][1000 genomes]
rs6971975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117633400-117645400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:117638800-117644600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:117639400-117643800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:117641200-117647000	Weak transcription	Fetal Kidney	kidney
5	chr7:117641400-117644000	Weak transcription	Fetal Brain Female	brain
6	chr7:117641600-117653800	Weak transcription	Pancreas	Pancrea
7	chr7:117643000-117643800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:117643000-117644400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:117643000-117644600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:117643000-117647800	Enhancers	Fetal Brain Male	brain
11	chr7:117643000-117648400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr7:117643200-117643400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
13	chr7:117643200-117644000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:117643200-117644000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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