Variant report

Variant	rs12672072
Chromosome Location	chr7:150224656-150224657
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1110093	0.94[EUR][1000 genomes]
rs11760959	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11760960	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11761391	0.84[EUR][1000 genomes]
rs11765395	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11768988	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11769223	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11770957	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11771561	0.95[EUR][1000 genomes]
rs11772952	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11979529	0.85[AFR][1000 genomes]
rs11980799	0.87[AFR][1000 genomes]
rs11982681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12703078	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12703083	0.96[EUR][1000 genomes]
rs13222905	0.96[EUR][1000 genomes]
rs13224067	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13231883	0.96[EUR][1000 genomes]
rs13232597	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13240941	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13242186	0.96[EUR][1000 genomes]
rs1568629	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1916003	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2177188	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2293172	0.94[EUR][1000 genomes]
rs2293174	0.95[EUR][1000 genomes]
rs2373815	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34211617	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34514106	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34545650	0.93[EUR][1000 genomes]
rs35133885	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35194540	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35225135	0.84[EUR][1000 genomes]
rs35388682	0.98[EUR][1000 genomes]
rs35496043	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35556724	0.85[EUR][1000 genomes]
rs35672177	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35677477	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36021964	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36185661	0.89[EUR][1000 genomes]
rs3807378	0.93[EUR][1000 genomes]
rs4725345	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4725348	0.85[EUR][1000 genomes]
rs4725908	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4725921	0.94[EUR][1000 genomes]
rs4725923	0.87[EUR][1000 genomes]
rs58414124	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62502270	0.95[EUR][1000 genomes]
rs62503177	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6949485	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73163503	0.95[EUR][1000 genomes]
rs73463344	0.85[AFR][1000 genomes]
rs7782113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv1025129	chr7:150146593-150266217	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3395746	chr7:150181141-150300680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	esv3341786	chr7:150220353-150269134	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150222800-150225800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
2	chr7:150224000-150224800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood

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