Variant report

Variant	rs36185661
Chromosome Location	chr15:39185040-39185041
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1110093	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11760959	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11760960	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11761391	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11762727	0.82[AMR][1000 genomes]
rs11765395	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11768988	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11769223	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11770957	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11771561	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11771962	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11772952	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11982681	0.89[EUR][1000 genomes]
rs12672072	0.89[EUR][1000 genomes]
rs12703078	0.87[EUR][1000 genomes]
rs12703083	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13222905	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13224067	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13231883	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13232597	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13240941	0.89[EUR][1000 genomes]
rs13242186	0.93[EUR][1000 genomes]
rs1568629	0.87[EUR][1000 genomes]
rs1916003	0.89[EUR][1000 genomes]
rs2177188	0.90[EUR][1000 genomes]
rs2177189	0.88[ASN][1000 genomes]
rs2293172	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2293174	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2373802	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2373815	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34211617	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34514106	0.89[EUR][1000 genomes]
rs34545650	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35133885	0.89[EUR][1000 genomes]
rs35194540	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35225135	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35388682	0.91[EUR][1000 genomes]
rs35496043	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35556724	0.95[EUR][1000 genomes]
rs35672177	0.89[EUR][1000 genomes]
rs35677477	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36021964	0.89[EUR][1000 genomes]
rs36159323	0.84[ASN][1000 genomes]
rs3807378	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4725345	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4725348	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4725908	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4725921	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4725923	0.90[EUR][1000 genomes]
rs58414124	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62502270	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62503177	0.89[EUR][1000 genomes]
rs6949485	0.89[EUR][1000 genomes]
rs73163503	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7782113	0.89[EUR][1000 genomes]
rs7802853	0.89[EUR][1000 genomes]
rs7803234	0.89[EUR][1000 genomes]
rs7809438	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv832975	chr15:39011915-39227590	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1054810	chr15:39019900-39578526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv542359	chr15:39019900-39578526	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1040746	chr15:39126735-39327690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv904090	chr15:39138908-39347192	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv457117	chr15:39183430-39380526	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv569207	chr15:39183430-39380526	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv569208	chr15:39183430-39385921	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39176200-39197600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr15:39178200-39185200	Weak transcription	Fetal Kidney	kidney
3	chr15:39179200-39187200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:39179600-39186400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:39179600-39186600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:39179800-39185200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:39179800-39185200	Weak transcription	NHLF	lung
8	chr15:39179800-39185200	Weak transcription	Osteobl	bone
9	chr15:39180000-39185400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:39181200-39185800	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:39181200-39186400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:39181400-39185200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:39181400-39185800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:39181400-39185800	Weak transcription	Fetal Stomach	stomach
15	chr15:39181800-39185600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:39181800-39185800	Weak transcription	Fetal Heart	heart
17	chr15:39182000-39185400	Weak transcription	A549	lung
18	chr15:39182000-39185800	Weak transcription	Fetal Lung	lung
19	chr15:39182000-39188400	Weak transcription	Placenta	Placenta
20	chr15:39183400-39185200	Weak transcription	Hela-S3	cervix
21	chr15:39183400-39185600	Weak transcription	Fetal Intestine Small	intestine
22	chr15:39183800-39185400	Weak transcription	Fetal Intestine Large	intestine
23	chr15:39185000-39187400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:39185000-39187400	Enhancers	Ovary	ovary
25	chr15:39185000-39189200	Enhancers	HSMM	muscle
26	chr15:39185000-39189800	Enhancers	HUVEC	blood vessel
27	chr15:39185000-39189800	Enhancers	NHDF-Ad	bronchial
28	chr15:39185000-39192000	Enhancers	Muscle Satellite Cultured Cells	--

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