Variant report

Variant	rs2373815
Chromosome Location	chr7:150265475-150265476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1110093	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11760959	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11760960	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11761391	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11762727	0.93[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs11765395	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11768988	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11769223	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11770957	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11771561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771962	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11772952	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11982681	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12672072	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12703077	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs12703078	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12703083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13222905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13224067	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13231883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13232597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13240941	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13242186	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1568627	0.85[CEU][hapmap]
rs1568629	0.94[EUR][1000 genomes]
rs1916003	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2177188	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2177189	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2293172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2293174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2373802	0.92[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34211617	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34514106	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34545650	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35133885	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35194540	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35225135	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35388682	0.98[EUR][1000 genomes]
rs35496043	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35556724	0.88[EUR][1000 genomes]
rs35672177	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35677477	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36021964	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36159323	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs36185661	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3735079	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs3807378	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4725345	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4725348	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4725905	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs4725906	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs4725908	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4725921	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4725923	0.90[EUR][1000 genomes]
rs58414124	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62502270	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62503177	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6949485	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73163503	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7782113	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7802853	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7803234	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7809438	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9691508	0.85[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv1025129	chr7:150146593-150266217	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3395746	chr7:150181141-150300680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	esv3341786	chr7:150220353-150269134	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv16529	chr7:150249312-150312843	Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
10	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
11	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150263800-150266600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:150263800-150266800	Active TSS	Adipose Nuclei	Adipose
3	chr7:150263800-150267600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr7:150263800-150267800	Active TSS	Rectal Smooth Muscle	rectum
5	chr7:150264000-150266200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:150264000-150266600	Active TSS	Stomach Smooth Muscle	stomach
7	chr7:150264000-150267000	Active TSS	Right Atrium	heart
8	chr7:150264000-150267000	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr7:150264000-150267400	Active TSS	Brain Hippocampus Middle	brain
10	chr7:150264000-150268200	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr7:150264200-150265800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:150264200-150265800	Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr7:150264200-150266000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
14	chr7:150264200-150266200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr7:150264200-150266400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:150264200-150266600	Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr7:150264200-150266800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr7:150264200-150266800	Active TSS	Brain Anterior Caudate	brain
19	chr7:150264400-150265800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
20	chr7:150264400-150266000	Active TSS	Primary T cells fromperipheralblood	blood
21	chr7:150264400-150266000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:150264400-150266200	Active TSS	Fetal Lung	lung
23	chr7:150264400-150266200	Active TSS	Fetal Muscle Trunk	muscle
24	chr7:150264400-150266200	Active TSS	Thymus	Thymus
25	chr7:150264400-150266400	Active TSS	Primary monocytes fromperipheralblood	blood
26	chr7:150264400-150266400	Active TSS	Lung	lung
27	chr7:150264400-150266600	Active TSS	Esophagus	oesophagus
28	chr7:150264400-150266600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
29	chr7:150264400-150266600	Active TSS	Fetal Muscle Leg	muscle
30	chr7:150264400-150266600	Active TSS	Placenta	Placenta
31	chr7:150264400-150266600	Active TSS	Fetal Stomach	stomach
32	chr7:150264400-150266600	Active TSS	Rectal Mucosa Donor 31	rectum
33	chr7:150264400-150266600	Active TSS	Right Ventricle	heart
34	chr7:150264400-150266800	Active TSS	Brain Inferior Temporal Lobe	brain
35	chr7:150264400-150266800	Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr7:150264400-150266800	Active TSS	Monocytes-CD14+_RO01746	blood
37	chr7:150264400-150267000	Active TSS	Liver	Liver
38	chr7:150264400-150267000	Active TSS	Brain Cingulate Gyrus	brain
39	chr7:150264400-150267000	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr7:150264400-150267000	Active TSS	Left Ventricle	heart
41	chr7:150264400-150267000	Active TSS	Sigmoid Colon	Sigmoid Colon
42	chr7:150264400-150267200	Active TSS	Primary T cells from cord blood	blood
43	chr7:150264400-150267200	Active TSS	Psoas Muscle	Psoas
44	chr7:150264400-150267400	Active TSS	Colonic Mucosa	Colon
45	chr7:150264400-150267600	Active TSS	Duodenum Mucosa	Duodenum
46	chr7:150264400-150268200	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr7:150264600-150266000	Active TSS	Brain Substantia Nigra	brain
48	chr7:150264600-150266200	Active TSS	Fetal Intestine Large	intestine
49	chr7:150264600-150266400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr7:150264600-150267800	Active TSS	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links