Variant report

Variant	rs2373802
Chromosome Location	chr7:150313689-150313690
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr7:150313642-150313758	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr7:150313498-150313698	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000232361	TF binding region

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1110093	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11760959	0.82[EUR][1000 genomes]
rs11760960	0.82[EUR][1000 genomes]
rs11761391	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11762727	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11765395	0.82[EUR][1000 genomes]
rs11768988	0.82[EUR][1000 genomes]
rs11769223	0.82[EUR][1000 genomes]
rs11770957	0.82[EUR][1000 genomes]
rs11771561	0.92[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11771962	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11772952	0.82[EUR][1000 genomes]
rs12703077	0.84[CEU][hapmap]
rs12703083	0.92[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12703093	0.82[EUR][1000 genomes]
rs12703094	0.82[EUR][1000 genomes]
rs13222905	0.92[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13224067	0.82[EUR][1000 genomes]
rs13227870	0.82[EUR][1000 genomes]
rs13231629	0.82[EUR][1000 genomes]
rs13231883	0.92[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13232597	0.92[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13242186	0.92[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs13244793	0.82[EUR][1000 genomes]
rs13247903	0.82[EUR][1000 genomes]
rs1916022	0.82[EUR][1000 genomes]
rs2077672	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2103035	0.82[EUR][1000 genomes]
rs2177188	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2177189	0.83[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs2286900	0.84[JPT][hapmap]
rs2293172	0.92[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2293174	0.91[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs2373815	0.92[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34035420	0.82[EUR][1000 genomes]
rs34211617	0.82[EUR][1000 genomes]
rs34454492	0.82[EUR][1000 genomes]
rs34545650	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34701708	0.81[EUR][1000 genomes]
rs34921151	0.82[EUR][1000 genomes]
rs35100689	0.82[EUR][1000 genomes]
rs35194540	0.82[EUR][1000 genomes]
rs35225135	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35253919	0.82[EUR][1000 genomes]
rs35302655	0.81[EUR][1000 genomes]
rs35388682	0.82[EUR][1000 genomes]
rs35496043	0.82[EUR][1000 genomes]
rs35556724	0.84[EUR][1000 genomes]
rs35677477	0.82[EUR][1000 genomes]
rs35719526	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35740621	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35790299	0.82[EUR][1000 genomes]
rs36185661	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3735078	0.84[JPT][hapmap]
rs3735079	0.84[CEU][hapmap]
rs3807378	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4725345	0.82[EUR][1000 genomes]
rs4725348	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4725352	0.82[EUR][1000 genomes]
rs4725353	0.82[EUR][1000 genomes]
rs4725905	0.83[CEU][hapmap]
rs4725906	0.84[CEU][hapmap]
rs4725921	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4725923	0.81[EUR][1000 genomes]
rs57378599	0.94[AFR][1000 genomes]
rs62491822	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62502270	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73163503	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7800307	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9691508	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv3388935	chr7:150301204-150374532	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150300600-150316800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr7:150312000-150314800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr7:150312200-150317000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:150312400-150317000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr7:150312400-150321800	Weak transcription	Dnd41	blood
6	chr7:150312600-150317600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:150312600-150317600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:150312800-150314400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr7:150312800-150317200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr7:150312800-150323000	Weak transcription	Fetal Thymus	thymus
11	chr7:150313200-150316800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr7:150313400-150317600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr7:150313600-150316800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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