Variant report

Variant	rs12672743
Chromosome Location	chr7:67366290-67366291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10499791	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12669404	1.00[ASN][1000 genomes]
rs12670521	1.00[ASN][1000 genomes]
rs12673122	1.00[ASN][1000 genomes]
rs12698629	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13241679	1.00[ASN][1000 genomes]
rs2170515	1.00[ASN][1000 genomes]
rs34077352	1.00[ASN][1000 genomes]
rs34657769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718651	1.00[ASN][1000 genomes]
rs4718652	1.00[ASN][1000 genomes]
rs4718654	1.00[ASN][1000 genomes]
rs6460407	1.00[ASN][1000 genomes]
rs6460408	1.00[ASN][1000 genomes]
rs6948543	0.93[ASN][1000 genomes]
rs6966581	0.98[ASN][1000 genomes]
rs6969759	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971801	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9638524	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027532	chr7:67261526-67387398	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:67365600-67366800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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