Variant report
| Variant | rs12670521 |
|---|---|
| Chromosome Location | chr7:67363216-67363217 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10499791 | 0.96[ASN][1000 genomes] |
| rs12669404 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12672743 | 1.00[ASN][1000 genomes] |
| rs12673122 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12698629 | 1.00[ASN][1000 genomes] |
| rs12698634 | 0.85[AMR][1000 genomes] |
| rs13238059 | 1.00[AFR][1000 genomes] |
| rs13241289 | 0.85[AMR][1000 genomes] |
| rs13241679 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13242525 | 1.00[AFR][1000 genomes] |
| rs2170515 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34075703 | 0.85[AMR][1000 genomes] |
| rs34077352 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34330232 | 0.85[AMR][1000 genomes] |
| rs34657769 | 1.00[ASN][1000 genomes] |
| rs35107817 | 0.85[AMR][1000 genomes] |
| rs35746743 | 1.00[AFR][1000 genomes] |
| rs4718651 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4718652 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4718654 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62457598 | 0.85[AMR][1000 genomes] |
| rs62458316 | 1.00[AFR][1000 genomes] |
| rs6460407 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6460408 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6948543 | 0.93[ASN][1000 genomes] |
| rs6966581 | 0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6969759 | 1.00[ASN][1000 genomes] |
| rs6971801 | 1.00[ASN][1000 genomes] |
| rs71535653 | 1.00[AFR][1000 genomes] |
| rs71535654 | 1.00[AFR][1000 genomes] |
| rs9638524 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1027532 | chr7:67261526-67387398 | Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:67363200-67363600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
