Variant report

Variant	rs13242525
Chromosome Location	chr7:67319077-67319078
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12666343	0.84[ASN][1000 genomes]
rs12670521	1.00[AFR][1000 genomes]
rs12698625	1.00[ASN][1000 genomes]
rs13238059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13244158	0.86[ASN][1000 genomes]
rs2864463	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2902759	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2902836	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34752925	0.81[ASN][1000 genomes]
rs35227483	0.88[ASN][1000 genomes]
rs35712623	0.86[ASN][1000 genomes]
rs35746743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35850158	0.91[ASN][1000 genomes]
rs3846975	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718638	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718641	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458311	1.00[ASN][1000 genomes]
rs62458316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946477	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951285	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955469	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955571	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973904	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975069	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71535653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71535654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027532	chr7:67261526-67387398	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:67317600-67319800	Enhancers	Fetal Brain Male	brain
2	chr7:67319000-67319200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:67319000-67319200	Active TSS	Brain Anterior Caudate	brain
4	chr7:67319000-67319200	Flanking Active TSS	Brain Substantia Nigra	brain
5	chr7:67319000-67319200	Enhancers	Fetal Brain Female	brain
6	chr7:67319000-67319400	Active TSS	Brain Angular Gyrus	brain
7	chr7:67319000-67319400	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr7:67319000-67319600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:67319000-67319600	Active TSS	Brain Cingulate Gyrus	brain
10	chr7:67319000-67319600	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr7:67319000-67319600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:67319000-67319600	Active TSS	NHDF-Ad	bronchial
13	chr7:67319000-67320000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:67319000-67320200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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