Variant report
| Variant | rs35227483 |
|---|---|
| Chromosome Location | chr7:67314327-67314328 |
| allele | A/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12666343 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12698625 | 0.88[ASN][1000 genomes] |
| rs13238059 | 0.88[ASN][1000 genomes] |
| rs13242525 | 0.88[ASN][1000 genomes] |
| rs13244158 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2864463 | 0.88[ASN][1000 genomes] |
| rs2902759 | 0.88[ASN][1000 genomes] |
| rs2902836 | 0.88[ASN][1000 genomes] |
| rs34752925 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs35712623 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs35746743 | 0.88[ASN][1000 genomes] |
| rs35850158 | 0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3846975 | 0.88[ASN][1000 genomes] |
| rs4718638 | 0.88[ASN][1000 genomes] |
| rs4718641 | 0.88[ASN][1000 genomes] |
| rs62458311 | 0.88[ASN][1000 genomes] |
| rs62458316 | 0.88[ASN][1000 genomes] |
| rs6946477 | 0.88[ASN][1000 genomes] |
| rs6951285 | 0.88[ASN][1000 genomes] |
| rs6955469 | 0.88[ASN][1000 genomes] |
| rs6955571 | 0.88[ASN][1000 genomes] |
| rs6973904 | 0.88[ASN][1000 genomes] |
| rs6975069 | 0.88[ASN][1000 genomes] |
| rs71535653 | 0.88[ASN][1000 genomes] |
| rs71535654 | 0.88[ASN][1000 genomes] |
| rs9647903 | 0.84[EUR][1000 genomes] |
| rs9647904 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1027532 | chr7:67261526-67387398 | Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | esv3416894 | chr7:67314017-67315915 | Enhancers ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:67314200-67314400 | Enhancers | ES-WA7 Cell Line | embryonic stem cell |
| 2 | chr7:67314200-67314400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
