Variant report
| Variant | rs6948543 |
|---|---|
| Chromosome Location | chr7:67363278-67363279 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10499791 | 0.89[ASN][1000 genomes] |
| rs12669404 | 0.93[ASN][1000 genomes] |
| rs12670521 | 0.93[ASN][1000 genomes] |
| rs12672743 | 0.93[ASN][1000 genomes] |
| rs12673122 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12698629 | 0.93[ASN][1000 genomes] |
| rs13241679 | 0.93[ASN][1000 genomes] |
| rs2128296 | 0.85[AFR][1000 genomes] |
| rs2170515 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs34077352 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs34657769 | 0.93[ASN][1000 genomes] |
| rs4718651 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4718652 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4718653 | 0.85[AFR][1000 genomes] |
| rs4718654 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6460407 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6460408 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6966581 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6969759 | 0.93[ASN][1000 genomes] |
| rs6971801 | 0.93[ASN][1000 genomes] |
| rs71517066 | 0.88[AFR][1000 genomes] |
| rs9638524 | 0.93[ASN][1000 genomes] |
| rs9942654 | 0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1027532 | chr7:67261526-67387398 | Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:67363200-67363600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
