Variant report

Variant	rs12673488
Chromosome Location	chr7:39353071-39353072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39351047..39353326-chr7:39354900..39357326,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10807900	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12669066	0.81[AMR][1000 genomes]
rs12673726	0.81[AMR][1000 genomes]
rs12701705	0.81[CEU][hapmap]
rs12701715	0.81[AMR][1000 genomes]
rs12701716	0.87[CHB][hapmap];0.81[AMR][1000 genomes]
rs12701717	0.81[CHB][hapmap];0.81[AMR][1000 genomes]
rs12701718	0.81[AMR][1000 genomes]
rs12701719	0.81[AMR][1000 genomes]
rs12701720	0.81[AMR][1000 genomes]
rs12701721	0.87[CHB][hapmap];0.81[AMR][1000 genomes]
rs12701725	0.87[CHB][hapmap];0.81[AMR][1000 genomes]
rs12701726	0.87[CHB][hapmap];0.82[AMR][1000 genomes]
rs13222559	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34074172	0.81[AMR][1000 genomes]
rs34421793	0.81[AMR][1000 genomes]
rs34629959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35489723	0.81[AMR][1000 genomes]
rs35939093	0.81[AMR][1000 genomes]
rs4130697	0.87[CHB][hapmap];0.81[AMR][1000 genomes]
rs4130698	0.81[AMR][1000 genomes]
rs4236358	0.87[CHB][hapmap];0.81[AMR][1000 genomes]
rs4314553	0.82[CEU][hapmap]
rs4316059	0.85[CEU][hapmap]
rs4442035	0.83[AMR][1000 genomes]
rs4498449	0.87[CHB][hapmap]
rs4504545	0.82[CHB][hapmap]
rs4509216	0.86[CHB][hapmap];0.81[AMR][1000 genomes]
rs4530944	0.87[CHB][hapmap];0.81[AMR][1000 genomes]
rs4549686	0.81[AMR][1000 genomes]
rs4582444	0.87[CHB][hapmap]
rs4615450	0.81[AMR][1000 genomes]
rs4723841	0.81[AMR][1000 genomes]
rs4723844	0.81[AMR][1000 genomes]
rs4723847	0.81[AMR][1000 genomes]
rs4723848	0.81[AMR][1000 genomes]
rs4723849	0.81[AMR][1000 genomes]
rs4723850	0.87[CHB][hapmap];0.81[AMR][1000 genomes]
rs4989072	0.81[AMR][1000 genomes]
rs56055019	0.84[AMR][1000 genomes]
rs6949610	0.81[AMR][1000 genomes]
rs7803411	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39339600-39353600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:39350600-39353600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:39350600-39353600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:39350600-39358400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:39350800-39353400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:39350800-39353600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:39350800-39353600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:39350800-39353600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:39350800-39355200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:39351000-39353400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:39351000-39353400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:39351200-39353400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:39352200-39353800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:39352400-39353400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:39352600-39354000	Enhancers	Liver	Liver
16	chr7:39353000-39355200	Enhancers	HUES64 Cell Line	embryonic stem cell

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