Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39351047..39353326-chr7:39354900..39357326,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10807900	0.86[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs12673488	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12701705	0.85[CEU][hapmap];0.87[TSI][hapmap]
rs12701716	0.81[ASW][hapmap];0.87[CHB][hapmap];0.80[MEX][hapmap]
rs12701717	0.85[CHB][hapmap]
rs12701721	0.87[CHB][hapmap]
rs12701725	0.86[CHB][hapmap]
rs12701726	0.87[CHB][hapmap]
rs34629959	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4130697	0.87[CHB][hapmap];0.80[MEX][hapmap]
rs4236358	0.87[CHB][hapmap];0.80[MEX][hapmap]
rs4314553	0.85[CEU][hapmap]
rs4316059	0.88[CEU][hapmap]
rs4442035	0.81[AMR][1000 genomes]
rs4498449	0.81[ASW][hapmap];0.83[CHB][hapmap]
rs4504545	0.87[CHB][hapmap]
rs4509216	0.86[CHB][hapmap]
rs4530944	0.87[CHB][hapmap];0.80[MEX][hapmap]
rs4582444	0.81[ASW][hapmap];0.87[CHB][hapmap];0.80[MEX][hapmap]
rs4723850	0.87[CHB][hapmap]
rs56055019	0.82[AMR][1000 genomes]
rs7803411	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13222559	ANLN	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39350600-39358400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:39350800-39355200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:39353000-39355200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:39353200-39355200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:39353400-39355200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:39353400-39355400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:39353600-39355400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:39353800-39355200	Enhancers	Fetal Kidney	kidney
9	chr7:39354600-39355200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:39354600-39355400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:39354800-39358800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:39355000-39356400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:39355000-39356600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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