Variant report

Variant	rs12673797
Chromosome Location	chr7:57472885-57472886
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10224987	1.00[EUR][1000 genomes]
rs10229967	1.00[EUR][1000 genomes]
rs10232273	1.00[EUR][1000 genomes]
rs10234088	1.00[EUR][1000 genomes]
rs10240849	1.00[EUR][1000 genomes]
rs10261876	1.00[EUR][1000 genomes]
rs10265002	1.00[EUR][1000 genomes]
rs10268730	1.00[EUR][1000 genomes]
rs10268746	1.00[EUR][1000 genomes]
rs10270242	1.00[EUR][1000 genomes]
rs10271598	1.00[EUR][1000 genomes]
rs10271725	1.00[EUR][1000 genomes]
rs11135647	1.00[EUR][1000 genomes]
rs11135648	1.00[EUR][1000 genomes]
rs11135649	1.00[EUR][1000 genomes]
rs11980912	1.00[EUR][1000 genomes]
rs11983594	1.00[EUR][1000 genomes]
rs11983620	1.00[EUR][1000 genomes]
rs12667173	1.00[EUR][1000 genomes]
rs12667883	0.83[ASN][1000 genomes]
rs12669454	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12669546	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670190	0.85[ASN][1000 genomes]
rs12670667	1.00[EUR][1000 genomes]
rs12671726	0.84[ASN][1000 genomes]
rs12671801	1.00[EUR][1000 genomes]
rs12672197	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17136179	1.00[EUR][1000 genomes]
rs17136182	1.00[EUR][1000 genomes]
rs17136183	1.00[EUR][1000 genomes]
rs17136185	1.00[EUR][1000 genomes]
rs17136771	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151493	1.00[EUR][1000 genomes]
rs17151733	1.00[EUR][1000 genomes]
rs2396952	0.84[ASN][1000 genomes]
rs28570050	1.00[EUR][1000 genomes]
rs28657735	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34454158	1.00[EUR][1000 genomes]
rs34480071	1.00[EUR][1000 genomes]
rs35754388	1.00[EUR][1000 genomes]
rs56201751	0.82[ASN][1000 genomes]
rs56731979	1.00[EUR][1000 genomes]
rs57095323	1.00[EUR][1000 genomes]
rs57439334	1.00[EUR][1000 genomes]
rs57915171	1.00[EUR][1000 genomes]
rs60122908	0.83[ASN][1000 genomes]
rs60458555	0.82[ASN][1000 genomes]
rs60526750	1.00[EUR][1000 genomes]
rs60965433	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73343830	1.00[EUR][1000 genomes]
rs73343832	1.00[EUR][1000 genomes]
rs73343834	1.00[EUR][1000 genomes]
rs73343835	1.00[EUR][1000 genomes]
rs73343854	1.00[EUR][1000 genomes]
rs73343856	1.00[EUR][1000 genomes]
rs73343858	1.00[EUR][1000 genomes]
rs73343863	1.00[EUR][1000 genomes]
rs73343864	1.00[EUR][1000 genomes]
rs73343869	1.00[EUR][1000 genomes]
rs73343875	1.00[EUR][1000 genomes]
rs73343876	1.00[EUR][1000 genomes]
rs73345914	1.00[EUR][1000 genomes]
rs73345915	1.00[EUR][1000 genomes]
rs73345945	1.00[EUR][1000 genomes]
rs73360852	1.00[EUR][1000 genomes]
rs9656565	1.00[EUR][1000 genomes]
rs9656566	1.00[EUR][1000 genomes]
rs9656575	1.00[EUR][1000 genomes]
rs9656576	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033128	chr7:56787535-57493216	ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1016541	chr7:56823372-57806010	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1031261	chr7:56949355-57601047	Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
4	nsv1029803	chr7:57007829-57601047	ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
5	nsv1019165	chr7:57065348-57659814	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
6	nsv1032599	chr7:57065348-57667279	ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
7	nsv607046	chr7:57190580-57493216	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
8	nsv607047	chr7:57190580-57608901	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
9	nsv607048	chr7:57190580-58018981	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
10	esv2761119	chr7:57190580-58019970	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
11	nsv1031756	chr7:57197811-57667279	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
12	nsv464484	chr7:57208666-57589803	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
13	nsv607049	chr7:57208666-57589803	Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
14	nsv520659	chr7:57208666-57868103	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
15	nsv1020026	chr7:57212585-57626147	ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
16	nsv538866	chr7:57212585-57626147	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
17	nsv1021925	chr7:57212785-57493216	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
18	nsv1027618	chr7:57212785-57493216	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
19	nsv538867	chr7:57212785-57493216	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
20	nsv538868	chr7:57212785-57493216	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
21	nsv1017873	chr7:57244029-57882330	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
22	nsv1030369	chr7:57246268-57493216	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
23	nsv538869	chr7:57246268-57493216	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
24	nsv1018512	chr7:57253403-57855404	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
25	nsv538870	chr7:57253403-57855404	ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
26	nsv1017499	chr7:57253403-57886151	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
27	nsv538871	chr7:57253403-57886151	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
28	nsv607050	chr7:57254647-57589803	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
29	nsv1029476	chr7:57260920-58019983	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
30	esv2752161	chr7:57275833-57919980	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
31	nsv1030441	chr7:57288140-58019983	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
32	nsv1017492	chr7:57318828-57493216	ZNF genes & repeats Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
33	nsv538872	chr7:57318828-57493216	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
34	nsv1020184	chr7:57318828-58019983	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
35	nsv1031568	chr7:57323453-57493216	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
36	nsv1015195	chr7:57334076-58019983	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
37	nsv970846	chr7:57467707-57475411	Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region CpG island lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
38	nsv1027062	chr7:57470632-57597142	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
39	nsv1017630	chr7:57470632-57758908	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:57471200-57473200	ZNF genes & repeats	Pancreas	Pancrea
2	chr7:57471200-57473200	Active TSS	Rectal Smooth Muscle	rectum
3	chr7:57471400-57473000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:57471400-57473000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:57471400-57473000	ZNF genes & repeats	Gastric	stomach
6	chr7:57471400-57473200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:57471400-57473200	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr7:57471400-57473200	ZNF genes & repeats	Liver	Liver
9	chr7:57471600-57473000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:57471600-57473000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:57471600-57473000	Active TSS	Brain Substantia Nigra	brain
12	chr7:57471600-57473000	Active TSS	Left Ventricle	heart
13	chr7:57471600-57473000	Active TSS	Ovary	ovary
14	chr7:57471600-57473000	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr7:57471600-57473200	Active TSS	Colon Smooth Muscle	Colon
16	chr7:57471600-57473200	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr7:57471600-57473200	ZNF genes & repeats	Esophagus	oesophagus
18	chr7:57471600-57473200	Active TSS	Right Atrium	heart
19	chr7:57471600-57473400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
20	chr7:57471800-57473200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
21	chr7:57471800-57473200	Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr7:57472000-57473200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:57472000-57473200	ZNF genes & repeats	Brain Anterior Caudate	brain
24	chr7:57472200-57473000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
25	chr7:57472200-57473200	Active TSS	Stomach Smooth Muscle	stomach
26	chr7:57472400-57473000	Active TSS	Brain Hippocampus Middle	brain
27	chr7:57472600-57473200	ZNF genes & repeats	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links