Variant report

Variant	rs12674325
Chromosome Location	chr7:11063076-11063077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10257220	1.00[ASN][1000 genomes]
rs10487898	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12666576	0.98[ASN][1000 genomes]
rs12669769	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12669865	0.92[AFR][1000 genomes]
rs12670220	1.00[ASN][1000 genomes]
rs12671481	0.95[ASN][1000 genomes]
rs12671644	0.95[ASN][1000 genomes]
rs12672069	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12672128	1.00[ASN][1000 genomes]
rs16876772	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs16876779	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17149825	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17149830	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17149834	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17149838	1.00[ASN][1000 genomes]
rs17163803	0.86[ASN][1000 genomes]
rs17163823	0.85[AFR][1000 genomes]
rs17163854	0.92[AFR][1000 genomes]
rs17163857	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17163872	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17163880	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17163892	0.92[ASN][1000 genomes]
rs17163894	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17163895	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17163897	1.00[ASN][1000 genomes]
rs17163898	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17163903	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17163914	0.92[ASN][1000 genomes]
rs17163915	0.95[ASN][1000 genomes]
rs17163919	1.00[ASN][1000 genomes]
rs17163921	1.00[ASN][1000 genomes]
rs2301960	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2301961	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2301962	1.00[ASN][1000 genomes]
rs28670953	0.92[ASN][1000 genomes]
rs3779409	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3779410	1.00[ASN][1000 genomes]
rs3801434	1.00[ASN][1000 genomes]
rs3801439	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3801440	1.00[ASN][1000 genomes]
rs3801443	1.00[ASN][1000 genomes]
rs3801445	0.98[ASN][1000 genomes]
rs3815234	1.00[ASN][1000 genomes]
rs4348382	1.00[ASN][1000 genomes]
rs4398795	0.91[ASN][1000 genomes]
rs4521663	0.95[ASN][1000 genomes]
rs60680874	1.00[ASN][1000 genomes]
rs61011519	1.00[ASN][1000 genomes]
rs6950505	0.95[ASN][1000 genomes]
rs6951535	1.00[ASN][1000 genomes]
rs6956108	1.00[ASN][1000 genomes]
rs6970876	1.00[ASN][1000 genomes]
rs73678561	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv887600	chr7:10807685-11090546	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv949387	chr7:10815994-11281536	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	nsv1029882	chr7:10872162-11371145	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv1031498	chr7:10882696-11110412	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	nsv1030035	chr7:11027819-11256089	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
14	nsv606194	chr7:11042905-11144078	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11014600-11092000	Weak transcription	Colonic Mucosa	Colon
2	chr7:11014800-11075200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:11014800-11117400	Weak transcription	HSMMtube	muscle
4	chr7:11015000-11064000	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:11015200-11108200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr7:11017200-11076000	Weak transcription	HUVEC	blood vessel
7	chr7:11018600-11063800	Weak transcription	Brain Angular Gyrus	brain
8	chr7:11022800-11071000	Weak transcription	Right Ventricle	heart
9	chr7:11023200-11076200	Weak transcription	NH-A	brain
10	chr7:11031600-11103800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:11034800-11064200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr7:11035400-11064000	Weak transcription	Brain Germinal Matrix	brain
13	chr7:11035800-11063800	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:11035800-11076000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:11035800-11092600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:11035800-11113000	Weak transcription	Esophagus	oesophagus
17	chr7:11035800-11113200	Weak transcription	Lung	lung
18	chr7:11035800-11123000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:11036000-11101600	Weak transcription	Placenta	Placenta
20	chr7:11036600-11063600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:11036600-11100800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:11038800-11063800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr7:11039000-11066800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:11039000-11090600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr7:11039000-11108800	Weak transcription	Psoas Muscle	Psoas
26	chr7:11039400-11063600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:11039600-11063800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr7:11046000-11128600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr7:11046200-11175000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr7:11046600-11063600	Weak transcription	Fetal Brain Female	brain
31	chr7:11046600-11081200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr7:11046600-11103400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr7:11046600-11122600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:11046600-11167800	Weak transcription	Thymus	Thymus
35	chr7:11048200-11071600	Weak transcription	Gastric	stomach
36	chr7:11048200-11098600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:11048200-11113400	Weak transcription	Aorta	Aorta
38	chr7:11049400-11063800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr7:11049800-11063800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:11050800-11064000	Weak transcription	NHEK	skin
41	chr7:11051000-11076000	Weak transcription	HMEC	breast
42	chr7:11052200-11063600	Weak transcription	Brain Anterior Caudate	brain
43	chr7:11053600-11063800	Weak transcription	Brain Substantia Nigra	brain
44	chr7:11053600-11078000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr7:11054400-11063800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr7:11054400-11075200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr7:11054400-11101800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:11054400-11113200	Weak transcription	Pancreas	Pancrea
49	chr7:11054600-11063600	Weak transcription	Ovary	ovary
50	chr7:11054600-11063800	Weak transcription	K562	blood

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