Variant report

Variant	rs17163915
Chromosome Location	chr7:11075058-11075059
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:11012451..11014446-chr7:11075009..11077346,2	MCF-7	breast:
2	chr7:11073711..11075320-chr7:11100379..11102062,2	K562	blood:

Variant related genes	Relation type
ENSG00000106443	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10257220	0.95[ASN][1000 genomes]
rs10487898	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12666576	0.94[ASN][1000 genomes]
rs12669769	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12669865	1.00[JPT][hapmap]
rs12670220	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12671481	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12671644	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12672069	0.95[ASN][1000 genomes]
rs12672128	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12674325	0.95[ASN][1000 genomes]
rs16876772	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16876779	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17149825	0.95[ASN][1000 genomes]
rs17149830	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17149834	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17149838	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17163803	0.90[ASN][1000 genomes]
rs17163854	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17163857	0.95[ASN][1000 genomes]
rs17163872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17163880	0.95[ASN][1000 genomes]
rs17163892	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17163894	0.90[CHB][hapmap];1.00[ASN][1000 genomes]
rs17163895	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17163897	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17163898	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17163903	0.95[ASN][1000 genomes]
rs17163914	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17163919	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17163921	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2301960	1.00[ASN][1000 genomes]
rs2301961	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2301962	0.95[ASN][1000 genomes]
rs28670953	0.97[ASN][1000 genomes]
rs3779409	1.00[ASN][1000 genomes]
rs3779410	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3801434	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3801439	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3801440	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3801443	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3801445	0.81[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3801456	1.00[JPT][hapmap]
rs3815234	0.95[ASN][1000 genomes]
rs4348382	0.95[ASN][1000 genomes]
rs4398795	0.95[ASN][1000 genomes]
rs4521663	1.00[ASN][1000 genomes]
rs55813149	1.00[AMR][1000 genomes]
rs56685525	1.00[AMR][1000 genomes]
rs56799320	1.00[AMR][1000 genomes]
rs56802892	1.00[AMR][1000 genomes]
rs56913090	1.00[AMR][1000 genomes]
rs57011556	1.00[AMR][1000 genomes]
rs57600747	1.00[AMR][1000 genomes]
rs57951445	1.00[AMR][1000 genomes]
rs58710725	1.00[AMR][1000 genomes]
rs58883350	1.00[AMR][1000 genomes]
rs58903529	1.00[AMR][1000 genomes]
rs58927562	1.00[AMR][1000 genomes]
rs59102692	1.00[AMR][1000 genomes]
rs59328153	1.00[AMR][1000 genomes]
rs59434425	1.00[AMR][1000 genomes]
rs59441504	1.00[AMR][1000 genomes]
rs60418788	1.00[AMR][1000 genomes]
rs60502036	1.00[AMR][1000 genomes]
rs60680874	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60946963	1.00[AMR][1000 genomes]
rs61011519	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61481160	1.00[AMR][1000 genomes]
rs61646663	1.00[AMR][1000 genomes]
rs61647045	1.00[AMR][1000 genomes]
rs6950505	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6951535	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6956108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6970876	0.95[ASN][1000 genomes]
rs73286542	1.00[AMR][1000 genomes]
rs73678561	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv887600	chr7:10807685-11090546	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv949387	chr7:10815994-11281536	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	nsv1029882	chr7:10872162-11371145	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv1031498	chr7:10882696-11110412	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	nsv1030035	chr7:11027819-11256089	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
14	nsv606194	chr7:11042905-11144078	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv887602	chr7:11071993-11220846	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11014600-11092000	Weak transcription	Colonic Mucosa	Colon
2	chr7:11014800-11075200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:11014800-11117400	Weak transcription	HSMMtube	muscle
4	chr7:11015200-11108200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr7:11017200-11076000	Weak transcription	HUVEC	blood vessel
6	chr7:11023200-11076200	Weak transcription	NH-A	brain
7	chr7:11031600-11103800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:11035800-11076000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:11035800-11092600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:11035800-11113000	Weak transcription	Esophagus	oesophagus
11	chr7:11035800-11113200	Weak transcription	Lung	lung
12	chr7:11035800-11123000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:11036000-11101600	Weak transcription	Placenta	Placenta
14	chr7:11036600-11100800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:11039000-11090600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:11039000-11108800	Weak transcription	Psoas Muscle	Psoas
17	chr7:11046000-11128600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr7:11046200-11175000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr7:11046600-11081200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr7:11046600-11103400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr7:11046600-11122600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr7:11046600-11167800	Weak transcription	Thymus	Thymus
23	chr7:11048200-11098600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:11048200-11113400	Weak transcription	Aorta	Aorta
25	chr7:11051000-11076000	Weak transcription	HMEC	breast
26	chr7:11053600-11078000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:11054400-11075200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr7:11054400-11101800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:11054400-11113200	Weak transcription	Pancreas	Pancrea
30	chr7:11054800-11076200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:11055200-11076000	Weak transcription	GM12878-XiMat	blood
32	chr7:11055400-11075800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr7:11055600-11077600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr7:11056600-11076200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr7:11057800-11190200	Weak transcription	Fetal Brain Male	brain
36	chr7:11064000-11078400	Weak transcription	Brain Angular Gyrus	brain
37	chr7:11064200-11075200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:11064200-11076000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr7:11064200-11076200	Weak transcription	Colon Smooth Muscle	Colon
40	chr7:11064200-11080200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr7:11064200-11093600	Weak transcription	Hela-S3	cervix
42	chr7:11064400-11075200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr7:11064400-11075200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr7:11064400-11075400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr7:11064400-11075400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:11064400-11076200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr7:11064400-11080600	Weak transcription	Brain Substantia Nigra	brain
48	chr7:11064400-11082800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:11064400-11084800	Weak transcription	Brain Hippocampus Middle	brain
50	chr7:11064400-11088400	Weak transcription	Brain Anterior Caudate	brain

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