Variant report

Variant	rs17149825
Chromosome Location	chr7:11020689-11020690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:10971957..10975609-chr7:11018033..11021117,4	K562	blood:
2	chr7:10908452..10910556-chr7:11019934..11022818,2	K562	blood:
3	chr7:11011659..11015162-chr7:11015338..11021925,15	MCF-7	breast:
4	chr7:11020065..11021823-chr7:11028190..11029928,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106443	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10257220	0.90[ASN][1000 genomes]
rs10487898	0.90[ASN][1000 genomes]
rs12666576	0.89[ASN][1000 genomes]
rs12669769	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12669865	0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12670220	0.90[ASN][1000 genomes]
rs12671481	0.95[ASN][1000 genomes]
rs12671644	0.95[ASN][1000 genomes]
rs12672069	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12672128	0.90[ASN][1000 genomes]
rs12674325	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs16876772	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16876779	0.90[ASN][1000 genomes]
rs17149830	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17149834	0.90[ASN][1000 genomes]
rs17149838	0.90[ASN][1000 genomes]
rs17163803	0.92[ASN][1000 genomes]
rs17163823	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17163854	0.93[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17163857	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17163872	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17163880	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17163892	0.98[ASN][1000 genomes]
rs17163894	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17163895	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17163897	0.90[ASN][1000 genomes]
rs17163898	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17163903	0.90[ASN][1000 genomes]
rs17163914	0.92[ASN][1000 genomes]
rs17163915	0.95[ASN][1000 genomes]
rs17163919	0.90[ASN][1000 genomes]
rs17163921	0.90[ASN][1000 genomes]
rs2301960	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2301961	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2301962	0.90[ASN][1000 genomes]
rs28670953	0.98[ASN][1000 genomes]
rs3779409	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3779410	0.90[ASN][1000 genomes]
rs3801434	0.90[ASN][1000 genomes]
rs3801439	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3801440	0.90[ASN][1000 genomes]
rs3801443	0.90[ASN][1000 genomes]
rs3801445	0.89[ASN][1000 genomes]
rs3815234	0.90[ASN][1000 genomes]
rs4348382	0.90[ASN][1000 genomes]
rs4398795	0.91[ASN][1000 genomes]
rs4521663	0.95[ASN][1000 genomes]
rs60680874	0.90[ASN][1000 genomes]
rs61011519	0.90[ASN][1000 genomes]
rs6950505	0.95[ASN][1000 genomes]
rs6951535	0.90[ASN][1000 genomes]
rs6956108	0.90[ASN][1000 genomes]
rs6970876	0.90[ASN][1000 genomes]
rs73678561	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv887600	chr7:10807685-11090546	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv949387	chr7:10815994-11281536	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	esv2752140	chr7:10817060-11029748	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv1029882	chr7:10872162-11371145	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv1031498	chr7:10882696-11110412	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	nsv887601	chr7:10912949-11049523	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11014200-11038600	Weak transcription	Small Intestine	intestine
2	chr7:11014400-11022200	Weak transcription	Esophagus	oesophagus
3	chr7:11014400-11022200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:11014400-11031800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:11014400-11033200	Weak transcription	Left Ventricle	heart
6	chr7:11014600-11021800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:11014600-11022200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:11014600-11022200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:11014600-11022200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:11014600-11022200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:11014600-11022200	Weak transcription	Fetal Muscle Leg	muscle
12	chr7:11014600-11022200	Weak transcription	Lung	lung
13	chr7:11014600-11032800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:11014600-11035000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr7:11014600-11035000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:11014600-11035000	Weak transcription	Placenta	Placenta
17	chr7:11014600-11035200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:11014600-11038600	Weak transcription	Psoas Muscle	Psoas
19	chr7:11014600-11045400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr7:11014600-11092000	Weak transcription	Colonic Mucosa	Colon
21	chr7:11014800-11021800	Weak transcription	NH-A	brain
22	chr7:11014800-11022000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr7:11014800-11022200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:11014800-11022200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr7:11014800-11022200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr7:11014800-11022200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:11014800-11022200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:11014800-11022200	Weak transcription	Adipose Nuclei	Adipose
29	chr7:11014800-11022200	Weak transcription	Brain Anterior Caudate	brain
30	chr7:11014800-11022200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr7:11014800-11022200	Weak transcription	Fetal Kidney	kidney
32	chr7:11014800-11026400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr7:11014800-11032200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr7:11014800-11032600	Weak transcription	Osteobl	bone
35	chr7:11014800-11033000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr7:11014800-11033000	Weak transcription	Brain Hippocampus Middle	brain
37	chr7:11014800-11033400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr7:11014800-11034600	Weak transcription	HMEC	breast
39	chr7:11014800-11035000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr7:11014800-11039200	Weak transcription	Brain Substantia Nigra	brain
41	chr7:11014800-11054200	Weak transcription	NHLF	lung
42	chr7:11014800-11075200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr7:11014800-11117400	Weak transcription	HSMMtube	muscle
44	chr7:11015000-11022000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr7:11015000-11022200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr7:11015000-11022200	Weak transcription	Fetal Stomach	stomach
47	chr7:11015000-11022400	Weak transcription	Fetal Intestine Large	intestine
48	chr7:11015000-11029200	Weak transcription	Fetal Intestine Small	intestine
49	chr7:11015000-11034000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr7:11015000-11037400	Weak transcription	Placenta Amnion	Placenta Amnion

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