Variant report

Variant	rs1267672
Chromosome Location	chr6:15743433-15743434
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1041249	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs170229	0.93[EUR][1000 genomes]
rs178331	0.91[EUR][1000 genomes]
rs186384	0.81[EUR][1000 genomes]
rs1883450	0.81[EUR][1000 genomes]
rs220892	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs220902	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs220906	0.91[EUR][1000 genomes]
rs220909	0.93[EUR][1000 genomes]
rs220910	0.89[EUR][1000 genomes]
rs220912	0.91[EUR][1000 genomes]
rs220915	0.92[EUR][1000 genomes]
rs220916	0.92[EUR][1000 genomes]
rs220921	0.89[EUR][1000 genomes]
rs2327912	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2619511	0.95[EUR][1000 genomes]
rs2619513	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2619554	0.96[EUR][1000 genomes]
rs2760113	0.89[EUR][1000 genomes]
rs391939	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs400487	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4715994	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4715996	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6459411	0.86[EUR][1000 genomes]
rs6459412	0.93[EUR][1000 genomes]
rs6908120	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6926431	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs942088	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs942089	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs943726	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15737000-15745400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:15740600-15745200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:15740600-15745200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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