Variant report

Variant	rs178331
Chromosome Location	chr6:15770834-15770835
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15769944..15772449-chr6:16127931..16130991,3	K562	blood:
2	chr6:15767905..15772449-chr6:16128086..16131802,6	K562	blood:
3	chr6:15770365..15771122-chr6:16183059..16183965,2	MCF-7	breast:
4	chr6:15760446..15762899-chr6:15770355..15772720,2	K562	blood:
5	chr6:15768943..15771188-chr6:15931054..15932857,2	K562	blood:
6	chr6:15769393..15771029-chr6:15905967..15908693,2	MCF-7	breast:
7	chr6:15768418..15771431-chr6:16127992..16131579,4	MCF-7	breast:
8	chr6:15767469..15773334-chr6:16127835..16130840,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1041249	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1267672	0.91[EUR][1000 genomes]
rs170229	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs186384	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1883450	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs220892	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220902	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220906	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220909	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220910	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220912	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220915	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220916	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220921	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs220924	0.86[ASN][1000 genomes]
rs2327912	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2619511	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2619513	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2619554	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2760113	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs391939	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs400487	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4715994	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4715996	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6459411	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6459412	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6908120	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6926431	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs942088	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs942089	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs943726	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2762581	chr6:15763793-15774802	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv518098	chr6:15764675-15771988	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15762200-15782000	Weak transcription	Pancreas	Pancrea
2	chr6:15765000-15771000	Weak transcription	Gastric	stomach
3	chr6:15768800-15771600	Enhancers	K562	blood
4	chr6:15769200-15771800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:15770000-15771200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:15770000-15771400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:15770000-15771800	Enhancers	GM12878-XiMat	blood
8	chr6:15770200-15771200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:15770400-15771000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:15770600-15771200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:15770800-15771000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:15770800-15771200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung

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