Variant report

Variant	rs1883450
Chromosome Location	chr6:15802026-15802027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15793143..15797186-chr6:15800762..15804369,3	K562	blood:
2	chr6:15800944..15803032-chr6:16138888..16140630,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1041249	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1267672	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs170229	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs178331	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs186384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs220892	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs220902	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs220906	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs220909	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs220910	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs220912	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs220915	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs220916	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs220921	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs220924	0.89[MEX][hapmap]
rs2327912	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2619511	0.83[EUR][1000 genomes]
rs2619513	1.00[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs2619554	0.85[EUR][1000 genomes]
rs391939	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs400487	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4715994	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4715996	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6459412	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6908120	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6926431	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6942242	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs942088	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs942089	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs943726	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1883450	DTNBP1	cis	cerebellum	SCAN
rs1883450	FCRL5	trans	parietal	SCAN
rs1883450	DTNBP1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15800400-15816200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:15801200-15802200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:15801600-15802800	Weak transcription	Fetal Kidney	kidney
4	chr6:15801800-15803400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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