Variant report

Variant	rs12678671
Chromosome Location	chr8:126416023-126416024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28493975	0.88[ASN][1000 genomes]
rs2954006	0.95[ASN][1000 genomes]
rs2954007	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2954013	0.84[ASN][1000 genomes]
rs2980881	0.89[ASN][1000 genomes]
rs56363827	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410448	chr8:126339813-126418053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12678671	TRIB1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126404400-126424400	Weak transcription	Spleen	Spleen
2	chr8:126414000-126422800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:126414400-126417200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:126415400-126416200	Enhancers	Fetal Intestine Small	intestine
5	chr8:126415400-126416600	Enhancers	Fetal Intestine Large	intestine
6	chr8:126415600-126417000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:126415800-126417000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:126416000-126417000	Weak transcription	HepG2	liver
9	chr8:126416000-126417200	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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