Variant report

Variant	rs28493975
Chromosome Location	chr8:126415595-126415596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12678671	0.88[ASN][1000 genomes]
rs2954006	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2954007	0.91[ASN][1000 genomes]
rs2954010	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2954013	0.81[ASN][1000 genomes]
rs2980857	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2980881	0.85[ASN][1000 genomes]
rs56363827	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410448	chr8:126339813-126418053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28493975	TRIB1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126404400-126424400	Weak transcription	Spleen	Spleen
2	chr8:126414000-126422800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:126414400-126417200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:126414800-126416000	Enhancers	HepG2	liver
5	chr8:126415400-126415600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:126415400-126416200	Enhancers	Fetal Intestine Small	intestine
7	chr8:126415400-126416600	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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