Variant report

Variant	rs2954006
Chromosome Location	chr8:126417243-126417244
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11784803	0.90[EUR][1000 genomes]
rs12678671	0.95[ASN][1000 genomes]
rs28493975	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2954007	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2954013	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2980872	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2980881	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56363827	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410448	chr8:126339813-126418053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv397442	chr8:126416279-126420605	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2954006	TRIB1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126404400-126424400	Weak transcription	Spleen	Spleen
2	chr8:126414000-126422800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:126416800-126417600	Enhancers	Lung	lung
4	chr8:126417000-126417600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:126417000-126417800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:126417000-126418000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:126417000-126418200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr8:126417000-126418200	Enhancers	HepG2	liver
9	chr8:126417000-126418200	Enhancers	HUVEC	blood vessel
10	chr8:126417200-126417600	Enhancers	Fetal Muscle Leg	muscle
11	chr8:126417200-126417800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr8:126417200-126417800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:126417200-126417800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:126417200-126417800	Enhancers	Fetal Muscle Trunk	muscle
15	chr8:126417200-126417800	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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