Variant report

Variant	rs12681024
Chromosome Location	chr8:55037684-55037685
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:55037044..55042140-chr8:55046805..55049564,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137547	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10216491	0.81[EUR][1000 genomes]
rs1039926	0.81[EUR][1000 genomes]
rs10504161	0.81[EUR][1000 genomes]
rs10958397	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11993959	0.81[EUR][1000 genomes]
rs12114043	0.81[EUR][1000 genomes]
rs12114739	0.81[EUR][1000 genomes]
rs12679542	0.83[EUR][1000 genomes]
rs16919782	0.81[EUR][1000 genomes]
rs16919784	0.81[EUR][1000 genomes]
rs2008122	0.81[EUR][1000 genomes]
rs2292589	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34168614	0.83[EUR][1000 genomes]
rs4737487	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4737488	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4738678	0.81[EUR][1000 genomes]
rs60183530	0.87[EUR][1000 genomes]
rs61213253	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61271559	0.87[EUR][1000 genomes]
rs61477279	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6473909	0.88[EUR][1000 genomes]
rs6473911	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6473913	0.82[EUR][1000 genomes]
rs6473914	0.81[EUR][1000 genomes]
rs6473915	0.81[EUR][1000 genomes]
rs6983694	0.87[EUR][1000 genomes]
rs7011379	0.85[EUR][1000 genomes]
rs7011430	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7012031	0.81[EUR][1000 genomes]
rs71517558	0.81[EUR][1000 genomes]
rs72614666	0.87[EUR][1000 genomes]
rs72614671	0.84[EUR][1000 genomes]
rs7830051	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7842911	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs952194	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023983	chr8:54790309-55145770	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv539623	chr8:54790309-55145770	Bivalent Enhancer Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1026869	chr8:54989732-55089360	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	nsv890921	chr8:54991447-55043802	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv890923	chr8:54994759-55049255	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv890924	chr8:54994759-55052148	Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	nsv890925	chr8:55005489-55052148	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12681024	MRPL15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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