Variant report

Variant	rs12684600
Chromosome Location	chr9:95737875-95737876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95731583..95735118-chr9:95737800..95740218,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11531839	1.00[EUR][1000 genomes]
rs12237305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2281714	1.00[EUR][1000 genomes]
rs2398786	1.00[EUR][1000 genomes]
rs2398787	1.00[EUR][1000 genomes]
rs34646411	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36115778	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3739602	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95728200-95739600	Weak transcription	Fetal Stomach	stomach
2	chr9:95728800-95739400	Weak transcription	Gastric	stomach
3	chr9:95728800-95739600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:95728800-95740600	Weak transcription	Small Intestine	intestine
5	chr9:95729000-95739400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:95729000-95741400	Weak transcription	Right Ventricle	heart
7	chr9:95729200-95739200	Weak transcription	Colonic Mucosa	Colon
8	chr9:95732000-95741200	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:95733400-95741400	Weak transcription	Fetal Brain Female	brain
10	chr9:95733400-95742000	Weak transcription	Fetal Brain Male	brain
11	chr9:95733600-95738000	Weak transcription	Esophagus	oesophagus
12	chr9:95733800-95739400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:95735000-95739800	Enhancers	Placenta	Placenta
14	chr9:95735400-95752600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
15	chr9:95735600-95740200	Genic enhancers	Primary T cells fromperipheralblood	blood
16	chr9:95735800-95739600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:95735800-95739600	Strong transcription	Fetal Thymus	thymus
18	chr9:95735800-95740000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:95735800-95740200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr9:95735800-95740200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr9:95735800-95740400	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr9:95735800-95742200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr9:95736000-95740200	Strong transcription	Primary hematopoietic stem cells	blood
24	chr9:95736000-95741600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr9:95736200-95740200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr9:95736200-95740400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
27	chr9:95736200-95740400	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr9:95736400-95739000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr9:95736400-95739400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr9:95736400-95739600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr9:95736400-95740200	Genic enhancers	Primary T cells from cord blood	blood
32	chr9:95736600-95738200	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr9:95736600-95740200	Strong transcription	Thymus	Thymus
34	chr9:95736600-95740400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr9:95736800-95738600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:95736800-95738600	Strong transcription	Spleen	Spleen
37	chr9:95736800-95740200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr9:95736800-95740200	Strong transcription	Dnd41	blood
39	chr9:95736800-95740400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr9:95736800-95743200	Weak transcription	Stomach Mucosa	stomach
41	chr9:95737000-95738400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr9:95737000-95739000	Strong transcription	Primary B cells from cord blood	blood
43	chr9:95737200-95740200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr9:95737200-95740400	Strong transcription	Brain Germinal Matrix	brain
45	chr9:95737400-95738000	Genic enhancers	Fetal Intestine Small	intestine
46	chr9:95737400-95738400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr9:95737400-95738400	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr9:95737400-95738600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr9:95737400-95739600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr9:95737400-95740200	Strong transcription	GM12878-XiMat	blood

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