Variant report

Variant	rs3739602
Chromosome Location	chr9:95609564-95609565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95608455..95611741-chr9:95615690..95619501,3	K562	blood:

Variant related genes	Relation type
ENSG00000127081	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11531839	1.00[EUR][1000 genomes]
rs12237305	0.94[JPT][hapmap];1.00[EUR][1000 genomes]
rs12684600	1.00[EUR][1000 genomes]
rs1323276	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs2281714	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2398786	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2398787	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34646411	1.00[EUR][1000 genomes]
rs36115778	1.00[EUR][1000 genomes]
rs62572381	0.93[ASN][1000 genomes]
rs7023394	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95598000-95616800	ZNF genes & repeats	Liver	Liver
2	chr9:95600000-95610000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:95603400-95616200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:95605000-95611200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:95605000-95624200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:95605400-95611000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
7	chr9:95605600-95613200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
8	chr9:95605800-95610800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:95605800-95613400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:95605800-95615600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:95606000-95612400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
12	chr9:95606000-95613400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:95606200-95614000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
14	chr9:95606400-95611200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
15	chr9:95606600-95613600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr9:95606800-95610200	Weak transcription	Fetal Stomach	stomach
17	chr9:95606800-95619600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:95607400-95611000	ZNF genes & repeats	HMEC	breast
19	chr9:95607400-95613400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
20	chr9:95607600-95610800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
21	chr9:95607600-95611000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
22	chr9:95607600-95611000	ZNF genes & repeats	A549	lung
23	chr9:95607600-95611000	ZNF genes & repeats	HSMM	muscle
24	chr9:95607600-95611200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:95607600-95611200	ZNF genes & repeats	Primary B cells from cord blood	blood
26	chr9:95607600-95616200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
27	chr9:95607800-95610400	ZNF genes & repeats	Brain Anterior Caudate	brain
28	chr9:95607800-95610600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr9:95607800-95611000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
30	chr9:95607800-95611000	ZNF genes & repeats	NH-A	brain
31	chr9:95607800-95611200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
32	chr9:95607800-95611200	ZNF genes & repeats	Fetal Lung	lung
33	chr9:95607800-95611200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
34	chr9:95607800-95612400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
35	chr9:95607800-95612400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
36	chr9:95607800-95612400	ZNF genes & repeats	Brain Germinal Matrix	brain
37	chr9:95607800-95612600	ZNF genes & repeats	Fetal Muscle Leg	muscle
38	chr9:95607800-95612800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
39	chr9:95607800-95613200	ZNF genes & repeats	Fetal Intestine Large	intestine
40	chr9:95607800-95613400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
41	chr9:95607800-95614200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:95608000-95610200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
43	chr9:95608000-95610800	ZNF genes & repeats	Brain Substantia Nigra	brain
44	chr9:95608000-95611000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
45	chr9:95608000-95611000	ZNF genes & repeats	Psoas Muscle	Psoas
46	chr9:95608000-95612600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
47	chr9:95608000-95613000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
48	chr9:95608000-95613400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
49	chr9:95608000-95614000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr9:95608200-95610400	ZNF genes & repeats	Stomach Smooth Muscle	stomach

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