Variant report

Variant	rs7023394
Chromosome Location	chr9:95674613-95674614
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr9:95673788-95674732	A549	lung:	n/a	n/a
2	FOXA2	chr9:95673925-95674695	HepG2	liver:	n/a	n/a
3	FOXA2	chr9:95673962-95674963	A549	lung:	n/a	n/a
4	FOXA2	chr9:95673997-95674644	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95672518..95675002-chr9:95676684..95678735,2	MCF-7	breast:
2	chr9:95668983..95671268-chr9:95672944..95675033,2	K562	blood:

Variant related genes	Relation type
ALOX15P2	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10992479	1.00[CEU][hapmap]
rs12237305	0.94[JPT][hapmap]
rs1323276	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2281714	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2398786	0.96[ASN][1000 genomes]
rs2398787	0.96[ASN][1000 genomes]
rs34646411	1.00[ASN][1000 genomes]
rs36115778	1.00[ASN][1000 genomes]
rs3739602	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]
rs58060055	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62572381	0.85[ASN][1000 genomes]
rs73526832	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73526836	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73526842	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1818795	chr9:95656340-95689158	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv982639	chr9:95671744-95685131	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95673000-95675000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:95673600-95675000	Enhancers	Fetal Stomach	stomach
3	chr9:95673800-95674800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:95673800-95674800	Enhancers	Liver	Liver
5	chr9:95673800-95674800	Enhancers	Colonic Mucosa	Colon
6	chr9:95673800-95674800	Enhancers	HepG2	liver
7	chr9:95673800-95675000	Enhancers	Gastric	stomach
8	chr9:95673800-95675200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:95674000-95674800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:95674000-95674800	Enhancers	Ovary	ovary
11	chr9:95674000-95674800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr9:95674000-95675000	Enhancers	Pancreas	Pancrea
13	chr9:95674000-95675200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:95674400-95674800	Enhancers	Brain Angular Gyrus	brain
15	chr9:95674400-95674800	Flanking Active TSS	Brain Substantia Nigra	brain
16	chr9:95674400-95674800	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr9:95674400-95674800	Bivalent Enhancer	Hela-S3	cervix
18	chr9:95674400-95675000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:95674400-95675000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:95674400-95675200	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr9:95674400-95675400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:95674400-95675400	Bivalent Enhancer	Fetal Brain Male	brain
23	chr9:95674400-95675600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr9:95674400-95675800	Enhancers	Lung	lung
25	chr9:95674400-95679800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr9:95674600-95674800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:95674600-95674800	Enhancers	Brain Hippocampus Middle	brain
28	chr9:95674600-95674800	Enhancers	Right Atrium	heart
29	chr9:95674600-95674800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
30	chr9:95674600-95674800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
31	chr9:95674600-95675000	Enhancers	Esophagus	oesophagus
32	chr9:95674600-95675200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
33	chr9:95674600-95675400	Bivalent Enhancer	A549	lung
34	chr9:95674600-95679400	Weak transcription	Primary monocytes fromperipheralblood	blood

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