Variant report

Variant	rs2281714
Chromosome Location	chr9:95647837-95647838
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11531839	1.00[EUR][1000 genomes]
rs12237305	0.94[JPT][hapmap];1.00[EUR][1000 genomes]
rs12684600	1.00[EUR][1000 genomes]
rs1323276	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2398786	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2398787	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34646411	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36115778	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3739602	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58060055	0.94[ASN][1000 genomes]
rs62572381	0.91[ASN][1000 genomes]
rs7023394	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73526832	0.94[ASN][1000 genomes]
rs73526836	0.94[ASN][1000 genomes]
rs73526842	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv972781	chr9:95639258-95671744	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95640600-95648800	Weak transcription	Thymus	Thymus
2	chr9:95640800-95648600	Weak transcription	Primary T cells from cord blood	blood
3	chr9:95640800-95648600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr9:95641000-95648400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr9:95646600-95648200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr9:95646600-95648800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr9:95646800-95648400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr9:95646800-95649000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:95647600-95648400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:95647800-95651600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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