Variant report

Variant	rs12699612
Chromosome Location	chr7:14421915-14421916
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1319592	0.84[YRI][hapmap]
rs1319593	0.81[YRI][hapmap]
rs2217572	0.83[YRI][hapmap]
rs6947526	0.81[YRI][hapmap]
rs6958890	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14418600-14428400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:14420400-14422000	Enhancers	NHEK	skin
3	chr7:14420600-14422000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:14421600-14424400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:14421800-14424400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:14421800-14424400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:14421800-14425400	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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