Variant report

Variant	rs6958890
Chromosome Location	chr7:14404606-14404607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1019906	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10755842	0.96[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap]
rs10950520	0.85[CEU][hapmap]
rs11766474	0.82[AMR][1000 genomes]
rs11977804	0.95[CEU][hapmap];0.83[CHB][hapmap]
rs12155191	0.83[AMR][1000 genomes]
rs12333379	0.80[AMR][1000 genomes]
rs12699609	0.96[CEU][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.81[EUR][1000 genomes]
rs12699611	0.85[CEU][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs12699612	0.81[YRI][hapmap]
rs12699613	0.84[CEU][hapmap]
rs1319592	0.85[CEU][hapmap];0.92[YRI][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1319593	0.83[ASW][hapmap];0.88[CEU][hapmap];0.87[LWK][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1469618	0.88[CEU][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap]
rs17168097	0.84[CEU][hapmap];0.85[CHB][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17168106	0.88[CEU][hapmap];0.84[CHB][hapmap]
rs17168109	0.95[CEU][hapmap];0.83[CHB][hapmap]
rs17775102	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs2116532	0.96[CEU][hapmap];0.81[CHB][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs2217572	0.96[YRI][hapmap]
rs4721330	0.85[CHB][hapmap];0.88[TSI][hapmap]
rs4721331	0.84[YRI][hapmap];0.83[AMR][1000 genomes]
rs6946703	0.88[YRI][hapmap];0.83[AMR][1000 genomes]
rs6947526	0.83[MEX][hapmap];0.84[TSI][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes]
rs6963946	0.88[CEU][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap]
rs6971911	0.87[JPT][hapmap];0.84[TSI][hapmap]
rs6977358	0.80[CHD][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv967428	chr7:14390125-14405382	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6958890	ARL4A	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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