Variant report

Variant	rs17168097
Chromosome Location	chr7:14403799-14403800
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1019906	0.80[CEU][hapmap];0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10755842	0.88[CEU][hapmap]
rs11766474	0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11977804	0.83[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs11983089	0.92[CEU][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12155191	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12333379	0.82[AMR][1000 genomes]
rs12699609	0.88[CEU][hapmap]
rs12699611	0.84[CEU][hapmap]
rs12699613	0.85[CEU][hapmap]
rs1319592	0.81[CEU][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1319593	0.84[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1469618	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs17168106	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs17168109	0.81[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs17775102	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2116532	0.88[CEU][hapmap]
rs2217572	0.81[CEU][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs4721330	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4721331	0.92[CEU][hapmap];0.90[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59831821	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6946703	0.92[CEU][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6947526	0.92[CEU][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6958890	0.84[CEU][hapmap];0.85[CHB][hapmap];0.96[YRI][hapmap]
rs6963946	0.84[CEU][hapmap];0.90[JPT][hapmap]
rs6971911	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv967428	chr7:14390125-14405382	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14402200-14404600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links