Variant report

Variant	rs10755842
Chromosome Location	chr7:14413132-14413133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1019906	0.92[CEU][hapmap];0.82[CHB][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10245285	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs10950520	0.81[CEU][hapmap];0.91[CHB][hapmap]
rs11977804	0.91[CEU][hapmap]
rs11983089	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12155191	0.81[EUR][1000 genomes]
rs12333379	0.81[EUR][1000 genomes]
rs12699609	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12699611	0.89[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12699613	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs1319592	0.89[CEU][hapmap];0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1319593	0.92[CEU][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1469618	0.92[CEU][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap]
rs17168097	0.88[CEU][hapmap]
rs17168106	0.92[CEU][hapmap]
rs17168109	0.90[CEU][hapmap]
rs17775102	0.81[JPT][hapmap]
rs2116532	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs4721330	0.90[TSI][hapmap]
rs4721331	0.82[EUR][1000 genomes]
rs6946703	0.81[EUR][1000 genomes]
rs6947526	0.80[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs6958890	0.96[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap]
rs6963946	0.92[CEU][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap]
rs6971911	0.83[JPT][hapmap];0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10755842	ARL4A	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links