Variant report

Variant	rs11983089
Chromosome Location	chr7:14416664-14416665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10950520	0.81[CHB][hapmap]
rs11766474	0.91[JPT][hapmap]
rs11977804	0.90[JPT][hapmap]
rs12155191	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12333379	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12699609	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12699610	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12699611	0.81[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12699613	0.81[CEU][hapmap]
rs1319592	0.81[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1319593	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1469618	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs17168097	0.92[CEU][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17168106	0.85[CEU][hapmap];0.91[JPT][hapmap]
rs17168109	0.91[JPT][hapmap]
rs2217572	0.92[CEU][hapmap];0.95[JPT][hapmap]
rs4721330	0.96[CEU][hapmap];0.95[JPT][hapmap]
rs4721331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6946703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6947526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6963946	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14414200-14416800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:14416200-14417200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:14416400-14416800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:14416400-14416800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:14416600-14416800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:14416600-14417000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
7	chr7:14416600-14417400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:14416600-14417400	Enhancers	Adipose Nuclei	Adipose
9	chr7:14416600-14417600	Enhancers	Brain Anterior Caudate	brain
10	chr7:14416600-14419000	Enhancers	Osteobl	bone

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